Gene detail information of Glyur000377s00019611 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G59630.1 | 6.00E-155 | diphthamide synthesis DPH2 family protein |
| NR | XP_004498540.1 | 0 | PREDICTED: diphthamide biosynthesis protein 2-like [Cicer arietinum] |
| COG | YP_005842542.1 | 8.00E-11 | diphthamide synthesis protein [Fervidicoccus fontis Kam940] |
| trEMBL | tr|G7I4C6|G7I4C6_MEDTR | 0 | Diphthamide biosynthesis protein {ECO:0000313|EMBL:AES58794.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00377 | 127342 | 132903 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000377s00019611.1 | PF01866.12 | Diphthamide_syn | 28 | 163 | 2.20E-22 |
| Glyur000377s00019611.1 | PF01866.12 | Diphthamide_syn | 231 | 385 | 4.00E-30 |
| Glyur000377s00019611.2 | PF01866.12 | Diphthamide_syn | 28 | 163 | 2.20E-22 |
| Glyur000377s00019611.2 | PF01866.12 | Diphthamide_syn | 231 | 380 | 1.10E-32 |
| Glyur000377s00019611.3 | PF01866.12 | Diphthamide_syn | 28 | 163 | 2.20E-22 |
| Glyur000377s00019611.3 | PF01866.12 | Diphthamide_syn | 231 | 380 | 1.10E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.968 |
| SRR1783600 | control | 4.211 |
| SRR1783602 | moderate drought stress | 4.510 |
| SRR1811619 | moderate drought stress | 4.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.652 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.796 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.345 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.295 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.001 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.850 |
| SRR2868004 | Drought Stress (root) | 13.772 |
| SRR2967015 | Control (root) | 13.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.065 |
| SRR9715740 | Leaf | 8.037 |
| SRR9715741 | Leaf | 6.624 |
| SRR9715739 | Root | 2.049 |
| SRR9715742 | Root | 6.454 |
| SRR9715743 | Root | 5.963 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.524 |
| SRR8749028 | MeJA induced 9h | 9.862 |
| SRR8749029 | MeJA induced 9h | 8.838 |
| SRR8749030 | Uninduced | 6.569 |
| SRR8749031 | Uninduced | 4.450 |
| SRR8749032 | Uninduced | 4.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.059 |
| SRR8400027 | Control - Root | 11.810 |