Gene detail information of Glyur000377s00019608 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25630.2 | 4.00E-172 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_003545590.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g25630-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GZ63|PP397_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g25630 |
| trEMBL | tr|I1M9X9|I1M9X9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G21140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00377 | 113385 | 117366 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000377s00019608.1 | PF13041.1 | PPR_2 | 140 | 187 | 1.10E-12 |
| Glyur000377s00019608.1 | PF13041.1 | PPR_2 | 211 | 258 | 8.40E-11 |
| Glyur000377s00019608.1 | PF13041.1 | PPR_2 | 288 | 329 | 9.00E-12 |
| Glyur000377s00019608.1 | PF13041.1 | PPR_2 | 365 | 413 | 2.00E-12 |
| Glyur000377s00019608.1 | PF13041.1 | PPR_2 | 435 | 483 | 3.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.829 |
| SRR1783600 | control | 0.874 |
| SRR1783602 | moderate drought stress | 1.299 |
| SRR1811619 | moderate drought stress | 1.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.948 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.851 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.936 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.705 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.350 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.156 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 92.618 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 91.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.265 |
| SRR2868004 | Drought Stress (root) | 13.845 |
| SRR2967015 | Control (root) | 15.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 87.129 |
| SRR9715740 | Leaf | 105.768 |
| SRR9715741 | Leaf | 82.247 |
| SRR9715739 | Root | 0.091 |
| SRR9715742 | Root | 1.001 |
| SRR9715743 | Root | 0.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.280 |
| SRR8749028 | MeJA induced 9h | 14.935 |
| SRR8749029 | MeJA induced 9h | 6.070 |
| SRR8749030 | Uninduced | 1.815 |
| SRR8749031 | Uninduced | 1.301 |
| SRR8749032 | Uninduced | 1.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.861 |
| SRR8400027 | Control - Root | 5.144 |