Gene detail

Gene detail information of Glyur000377s00019607

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25752.1	2.00E-81	rhomboid-like protein 11
NR	AFK40428.1	1.40E-121	unknown [Lotus japonicus]
COG	YP_007128760.1	2.00E-52	Rhomboid family protein [Gloeocapsa sp. PCC 7428]
trEMBL	tr\|I3SJI6\|I3SJI6_LOTJA	5.00E-122	Uncharacterized protein {ECO:0000313\|EMBL:AFK40428.1}

Sequence

Transcript Sequence

>Glyur000377s00019607.1
ACAATTGAAAGCGCAAGCGAGCAGTTCCACCTTCTCCCTTCCATTCCAAAGGAAANCGAAGAATGGCACAAGTACAATTACAACTTGGAGGAATGCAANCATTCAAATTCCATTCAACATGCAAACTCACTCACCTTCACAACATCAATCCCCCCTCCTCCTTNTCTCCCATTCCCACCTTCAACACCAAACCCCCCTTCTCTCTCTCTCATCACTCCCTCTTCATGCTTCGTTCCCGCTACCCCACTTCATGCAACAAATCAGATATGATATCGCAGCTGGAAGTTGGGAAACCAGAGCTGAAGAAGGAACCCGAGAAACGAGTCAACGGGATATTCTGGGTTAATGGCATCAAGGATTTGTATTTGTACCACAACTGGCCTGCTTGGTACCAATTTGTCACAGCAACTTTTTGTCATGCTAATTGGAAACATCTTTCTAGCAACCTTTTTTTCTTATACATTTTTGGAAAGCTTGTTGAAGAGGAGGGAGGAAGCTTTGCTTTGTGGCTTTCTTACATTCTTACAGGTGTTGGAGCAAACCTTGTATCCTGGTTGGTTTTACCAAGAAATACAATCTCTGTTGGAGCNTCTGGTGCTGTTTTTGGGTTATTTACTATCAGTGTCCTTGTAAAGATGTCCTGGGATTGGAGGAAGATCCTTGAAGTGCTTATATTGGGTCAATTTGTTGTAGAGAAGGTCATGGAAGCAGCTCAAGCTTCAACATCGTTATCAGGAACCTTTCGTGGAGGCTACTCATTGCAAAGTGTCAATCATATTGCACATCTTTCTGGTGCTCTTGTTGGTGTGCTTTTGGTTTGGCTCCTAAGCAAAGTTCCTTCTGATCCCTCAGACTGATAATCCACCTTGCACAAGAAAACAGACCGAACTACACATGTAGCTTTGCTCAACCAATATTTCATATTAGAAGTGTCATATTTTTTGCTATTTCAGTTACTGTTGATGTTGAACCTCAAAATAACAGGAATATATCAATTATAGGGGTGTTATCTCAGTCTTATGAAGAAAGCTTACTACAGGCTCTCCTGGTACGGAAACCTTGTTTAATGTCTCTGATTATTTGTAGCGAAGAATGATGCTACTTGCATATAAGTTTTATACTTATGTCATTGTATATTTAACAAAAAAATTAAATGTAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00377	109564	112667	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000377s00019607.1	PF01694.17	Rhomboid	108	258	1.70E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.399
SRR1783600	control	7.388
SRR1783602	moderate drought stress	6.430
SRR1811619	moderate drought stress	6.605

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.378
DRR006520	Root Summer glycyrrhizin high producing strain	6.115
DRR006521	Root Winter glycyrrhizin high producing strain	5.988
DRR006522	Root Winter glycyrrhizin high producing strain	6.164
DRR006523	Root Summer glycyrrhizin low producing strain	6.814
DRR006524	Root Summer glycyrrhizin low producing strain	6.375
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.122
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.993

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.596
SRR2868004	Drought Stress (root)	7.123
SRR2967015	Control (root)	7.801

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.661
SRR9715740	Leaf	7.930
SRR9715741	Leaf	6.927
SRR9715739	Root	5.814
SRR9715742	Root	4.966
SRR9715743	Root	5.276

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.585
SRR8749028	MeJA induced 9h	2.958
SRR8749029	MeJA induced 9h	4.859
SRR8749030	Uninduced	1.743
SRR8749031	Uninduced	0.793
SRR8749032	Uninduced	1.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.731
SRR8400027	Control - Root	10.780