Gene detail information of Glyur000377s00019604.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53430.1 | 0 | SET domain group 29 |
| NR | AES58779.2 | 0 | histone-lysine N-methyltransferase ATX3 [Medicago truncatula] |
| COG | YP_003280830.1 | 7.00E-24 | nuclear protein SET [Comamonas testosteroni CNB-2] |
| Swissprot | tr|Q8GZ42|ATX5_ARATH | 0 | Histone-lysine N-methyltransferase ATX5 |
| trEMBL | tr|G7I4B1|G7I4B1_MEDTR | 0 | Histone-lysine N-methyltransferase ATX3 {ECO:0000313|EMBL:AES58779.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00377 | 80980 | 90488 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000377s00019604.1 | PF00855.12 | PWWP | 225 | 320 | 1.60E-12 |
| Glyur000377s00019604.1 | PF00628.24 | PHD | 418 | 471 | 1.50E-08 |
| Glyur000377s00019604.1 | PF13832.1 | zf-HC5HC2H_2 | 629 | 741 | 3.20E-28 |
| Glyur000377s00019604.1 | PF00856.23 | SET | 878 | 983 | 1.20E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.796 |
| SRR1783600 | control | 1.782 |
| SRR1783602 | moderate drought stress | 3.588 |
| SRR1811619 | moderate drought stress | 3.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.635 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.828 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.074 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.073 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.196 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.301 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.709 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.018 |
| SRR2868004 | Drought Stress (root) | 10.394 |
| SRR2967015 | Control (root) | 11.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.692 |
| SRR9715740 | Leaf | 6.269 |
| SRR9715741 | Leaf | 5.860 |
| SRR9715739 | Root | 0.573 |
| SRR9715742 | Root | 4.053 |
| SRR9715743 | Root | 3.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.849 |
| SRR8749028 | MeJA induced 9h | 4.923 |
| SRR8749029 | MeJA induced 9h | 3.539 |
| SRR8749030 | Uninduced | 2.222 |
| SRR8749031 | Uninduced | 2.839 |
| SRR8749032 | Uninduced | 3.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.068 |
| SRR8400027 | Control - Root | 7.130 |