Gene detail

Gene detail information of Glyur000377s00019603.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27900.2	2.00E-47	CCT motif family protein
NR	XP_003588527.1	1.04E-122	Zinc finger protein CONSTANS-like protein [Medicago truncatula]
Swissprot	tr\|Q940T9\|COL4_ARATH	4.00E-09	Zinc finger protein CONSTANS-LIKE 4
trEMBL	tr\|G7I4B0\|G7I4B0_MEDTR	4.00E-123	Uncharacterized protein {ECO:0000313\|EMBL:AFK44976.1}

Sequence

Transcript Sequence

>Glyur000377s00019603.1
AAAGCTCAAACCCCTCCCTCACAAATTTTCAGACTCTCTCTCTCTCTCTCTGGGAGTTTGTTTTGCTTCTCTTAGCTCAAGTGTAAACTGTGCTTGTCTTGCTCTGCTTTCGCTTCTTTGGTGAAAGTGTGTTTTTTCTTTGTGTGTCTCATTGAAGCTTTTGATTTTTCAATAAGAGTGTTTTCTCTGCTGGAAAAAGAAAAAAATGTTTGCAGAGACNGGTCTTCTCTTGCCATACTTGCAGAATTACTCTCAAGAGTTTCAACAACTTGAGGAGTACTGCATGACCCAGAAGTCCTTCAATGCTTCAATGGGTCTAAAATCCTCTGATATTGATGTGATTCAGAATGAACAGCTTTTGAGTGAGGTATACTATGAGTGCAAAAAAGACCTCTTAGAAAAGGCAGCAATAGATTCACCTCTCTCCGAAATTCTGGAAATCAAGATTCCTGCCCTGAACATAGATGAGAATTTCGGTCAAGAAAACAAACCACTNCCTGATGTACCATTACCAAAGAGTGTCAGTTCAGGAAGTTTGAGTTCAATGGACTGGATGCATGGGGCCGCAATGAAGCCTGCTTTCCTCGATTTCCCTGGAATAGATTTCAACGCATTTTGTGGCATGCGGAGAGCATTTAGTGAAGGAGATATAAAGACTCTCAGCGGTAATGGTAACGTGAACACTGGCCAATCTCCTCACGAGAGGCCTTTTCTTCTCAACAACTGCACTAGTGAGGAACGTCAAGAGAAGCTCTCAAGATACAGGAATAAGAAGACCAAGAGAAACTTTGGGAGGAAAATCAAGTATGCTTGCAGGAAGGCTCTCGCTGACAGTCAACCAAGAATCCGCGGAAGATTTGCAAAGACAGAAGAGTTTGATGTCAAGAGGCAATGAATGAACTCTTTTAACTGATTTAGTTGGGAAGAAAATGAAATCAATTCGCTGTATCAGATCAAGAAAAAGGTGGAATGGAAGAGCTTGGTAGTGCTAATGTGCGTGGGAATCATATAGACTTGGTGGACTTCTATAACTTGAGCAGGTATCAATGAATAAGACAAGATTCTCAAACTCACTCCTTTTGGTAGTTTGGCTCATATCTTCTGTAATAATAGCCTTCTTTCTTTGTAGACGGATATGACCTTCCNGATATGTACATAGGTATGTTTGTTGAATAAAAGAAGGGGGAAAAAATAGAGAGAAAAAAAAAGGTTGTATCTGTGAACTTTTTCTTTAATTAACTGTGTCATGTAAAATAATTCAGAATTATCGCTGACAATAATGGGTGGAAGTAGTACTAATCTTTGTCCATAGAGATTTACACAAATCACCATTAGTCACGATCATAGTGATTTGATAGTAATAATAATAATAATGGGTGGAAGTACTAATTAACCTTTGTCCTTAGCGATTCATACAAATTACCATCAATCATGATCATAGTGATTTATTTGTCGCCAGGGGTTTTTAATTTTCGTTNTGTTTCTGTTGGGGGGCAGCCCCCTCTTTGTTCACCCAAAAAAAAAAGTGATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00377	68276	73170	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000377s00019603.1	PF06203.9	CCT	179	222	7.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	107.379
SRR1783600	control	111.299
SRR1783602	moderate drought stress	126.740
SRR1811619	moderate drought stress	126.756

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	116.163
DRR006520	Root Summer glycyrrhizin high producing strain	111.330
DRR006521	Root Winter glycyrrhizin high producing strain	95.303
DRR006522	Root Winter glycyrrhizin high producing strain	92.191
DRR006523	Root Summer glycyrrhizin low producing strain	126.730
DRR006524	Root Summer glycyrrhizin low producing strain	126.168
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.406
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.354

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.668
SRR2868004	Drought Stress (root)	46.028
SRR2967015	Control (root)	54.680

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.902
SRR9715740	Leaf	46.112
SRR9715741	Leaf	45.410
SRR9715739	Root	51.396
SRR9715742	Root	117.749
SRR9715743	Root	102.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	49.507
SRR8749028	MeJA induced 9h	25.859
SRR8749029	MeJA induced 9h	49.626
SRR8749030	Uninduced	12.155
SRR8749031	Uninduced	2.767
SRR8749032	Uninduced	4.311

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	218.967
SRR8400027	Control - Root	278.558