Gene detail

Gene detail information of Glyur000376s00018699

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18250.1	1.00E-62	receptor serine/threonine kinase, putative
NR	XP_003619237.1	0	Kinase-like protein [Medicago truncatula]
COG	YP_001958461.1	1.00E-20	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	1.00E-68	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|A0A072VF38\|A0A072VF38_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:KEH40372.1}

Sequence

Transcript Sequence

>Glyur000376s00018699.1
CAAACACGATGCCAATATCATACACACACAAAAATTCGAAATGATTTGCTATCAGAGTTCTCCCCTGATGATGACAATGCTAGCATTGCTAATGCTGCTGCTTACGAATCTTGGGAATGGCCAGAATGGCCCGTCCACTGGATGTCCCTTCCGTCTATCTTGTATACATAACAACACAAAGATTCTTGAACTGCCGGCATATCCAGCCCCTTTGAAACTCCTCGTCATTGAAATTTATAGACGGCAATCATTAACAGCATATGATCCAGATAACTGTCTTCCTAGACTCTTACTTAGATTCAACTTTTCATTTCCTTTCCAGGCTTCTCACTCAAATACTGAGGAACCAAGCAACAATACTATTAGTTTTTTCAATTGTTCTTCAACAGGAGACGATGCGCAAGATATGTTGTCACATTGCCCAATTCATGCCATTTCCTCTGATGATGATATCGTTGCGAGGGACCTAGTATACTGCACCAAATTGTTTGACCGCGTTTGGCCAATAGAATATGACATATTTGGGAACTTCTTCTATTTGACATGGTCGGAAGGGGAGTTTGACAGAGGATGCTTAGAATGTAAGCACAAATCAAAGGAGAAGATTAAACACGTTATTTTATCTGCTGTAGGTGCAATCATTGGTCTGGCGCTTGTGCTCGGTGCCATCTTTCGCATATATCGCTATTTTAAGACGAAAGGCGAGGATCATGCCAGAATCGAAAACTTCTTGAGGGATTACAGAGCTTTAAAGCCAACCAGATTCTCCTATGCCGATATCAAAAGAATCACACATCAGTTTAAGGAAAAGCTCGGTGAAGGAACTCATGGAGCTGTCTACAAAGGTAAACTATCGAGCCAAATTATGGTTGCGGTGAAGATGCTCAATAACACAGAGGGAGATGGGACAGAGTTCATTAACGAAGTGGGAACCATGGGAAAAATCCATCATGTCCATGTGGTTCGCTTGCTTGGCTTCTGTGCTGATGGATTTTACCGTGCTTTGGTATATGACTTTTTCCCAAATGGTTCCCTGCAGAATTTCATTTCTCAATCGAATAACAAGGATACTTTTCTTGGATGGGACAAGTTGCAACAAATTGCTCTCGGCATAGCCAAAGGAATCGAGTATCTTCATCAGGGTTGTGACCAAAGAATTCTCCACTTTGACATCAACCCTCATAACGTCTTGCTAGATGAGAATTTCACCCCAAAAATTTCAGANTTCGGTTTGGCTAAGCTGTGCTCCAAAAATCAAAGTACTGTATCCATGACTGCAGCCAGGGGAACATTGGGCTACATGGCACCCGAAGTTTTTTCTAGAAACTTCGGGAATGTGTCATATAAGTCTGATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00376	177350	178843	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000376s00018699.1	PF07714.12	Pkinase_Tyr	253	439	1.90E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.039
SRR1783600	control	0.067
SRR1783602	moderate drought stress	0.055
SRR1811619	moderate drought stress	0.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.248
DRR006520	Root Summer glycyrrhizin high producing strain	1.264
DRR006521	Root Winter glycyrrhizin high producing strain	0.739
DRR006522	Root Winter glycyrrhizin high producing strain	0.762
DRR006523	Root Summer glycyrrhizin low producing strain	0.080
DRR006524	Root Summer glycyrrhizin low producing strain	0.040
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.120
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.288

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.048
SRR2868004	Drought Stress (root)	0.151
SRR2967015	Control (root)	0.428

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.399
SRR9715740	Leaf	0.219
SRR9715741	Leaf	6.311
SRR9715739	Root	0.000
SRR9715742	Root	0.010
SRR9715743	Root	0.045

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.992
SRR8400027	Control - Root	1.163