Gene detail

Gene detail information of Glyur000376s00018693

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53130.1	0	cyclic nucleotide gated channel 1
NR	XP_003544128.1	0	PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max]
COG	YP_006439308.1	9.00E-19	putative transcriptional regulator, Crp/Fnr family [Turneriella parva DSM 21527]
Swissprot	tr\|O65717\|CNGC1_ARATH	0	Cyclic nucleotide-gated ion channel 1
trEMBL	tr\|I1MAJ1\|I1MAJ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G31940.1}

Sequence

Transcript Sequence

>Glyur000376s00018693.1
GGAGTAGGCGGTGAGAAATTGAGGTGATGTTAGGAGGGATTTAGTAAGATTCACAAGGCTGATTCTTCATCTTCTTCCACATTGATTTTTAATCTAGGCTGCAGTTATGAGTACTACTCAGCAAGAGAAGTTTGTTAGGTTTCGGGATTGGAATTCAGAGAAGGTTTCTGAGAGAAATTATACTGCAATTAAGATAACACACCCGGGGAGATTTAGAACTACGTTAAGTTCATTTTCCGAGAAGTTTCATAGGGGATTGGAATCTGGTTCTGAGAGGATAAAGAGATTCAGAACAACGTTCCAATCTTTTCCCTATAATGGTTCTCTTTCTAGAAGCTTTGGTTCTGAAAGGAAAATCCTTGATCCACAGGGTCCATTCCTTCAAAAGTGGAACAAGATATTTGTGTTGTTATGTGTTATTGCTGTGTCACTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGGTGACAAGAAATGCCTTTCACTGGACAACAAGATGGAGATTACAGCAACTGTTTTGAGAACTTTCTCTGATGTCTTTTATATAATCCACATGATTTTCCAGTTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCTAAGAGGTATCTGTCAACATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTTATTCTAATTATCATTCCGGAGATGAGTGGCTATAAATCACTCAATACAAAGAACTTGCTGAAATTTGTTGTGTTCTTCCAATATGTGCCTCGTGTATTACGGATAATTCCACTATATAAAGAAGTTACGAGGACCTCTGGGATTCTCACCGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTCCTTGGTGCCTTTTGGTACTTGTTTTCTATAGAGCGAGAAACCACATGCTGGCAAGAAGCTTGTCGAAGTAATACTATGTGTAACAAGGCAGATATGTATTGTAATGATCATGATCATGATCATTGGGGAGGGTTGAGCACTGTTTCAACATTCTTGAATACCTCTTGCCCAATAAAGGAGGAAGATAAAAAGCTCTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCCCAAAAATTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCGATGTTTGGGAAATATGTTTTGCAGTTTTCATTTCCATAGCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACGTATTTGCAGTCAACAACGACAAGGTTGGAGGAGATGAGAGTAAAACGGAGGGATGCAGAACAGTGGATGTCTCATCGATTGCTTCCTGACAGCCTAAGAGAGCGAATCAGACGACATGAACAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAGTTTGATTCGTGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTCTGCTTGGATTTACTGATGAGACCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGGGAAGGAGACCCTGTCGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACCATGACAACCAACGGCGGAAGAACCGGCTTCTTCAACTCCGAGTACCTCAAGGCCGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCCTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAAACCCTCNTAGAAGTGGAAGCCTTTGCCCTAAAAGCCGACGATCTGAAGTTTGTGGCATCACAGTTCCGCCGCCTTCACAGCAAGCAGCTGCGCCACACTTTCAGGTTCTACTCACAACAATGGCGCACGTGGGCTGCGTGTTTCATACAAGCGGCCTGGCGGCGCTACAATAAGAGGAAGCTCGAAGAGTCTCTTGTTGAAGAGGAGAATAGGCTGAAAGATGCATTGGCAAAGGCTGGTGGTAGCTCAACAAGTCTAGGAGCCACCATATATGCTTCCAGGTTTGCTGCCAATGCACTCAGATTATTGCGGCGTAGTCGTAGCTGTGCCAGGAAGACAAGGGTGCCGGAGAGAATGCCCCCCATACTGCTTCAGAAGCCTGCAGAACCTGATTTTACTGCTGAAGAGCAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00376	132491	136885	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006811 ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005216 ion channel activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000376s00018693.1	PF00520.26	Ion_trans	139	409	2.30E-18
Glyur000376s00018693.1	PF00027.24	cNMP_binding	493	588	7.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.222
SRR1783600	control	15.329
SRR1783602	moderate drought stress	14.476
SRR1811619	moderate drought stress	14.150

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.627
DRR006520	Root Summer glycyrrhizin high producing strain	18.828
DRR006521	Root Winter glycyrrhizin high producing strain	5.941
DRR006522	Root Winter glycyrrhizin high producing strain	6.217
DRR006523	Root Summer glycyrrhizin low producing strain	29.165
DRR006524	Root Summer glycyrrhizin low producing strain	28.726
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.233
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.205
SRR2868004	Drought Stress (root)	14.735
SRR2967015	Control (root)	20.901

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.419
SRR9715740	Leaf	20.854
SRR9715741	Leaf	16.098
SRR9715739	Root	11.109
SRR9715742	Root	16.609
SRR9715743	Root	15.842

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.150
SRR8749028	MeJA induced 9h	6.175
SRR8749029	MeJA induced 9h	6.505
SRR8749030	Uninduced	1.256
SRR8749031	Uninduced	0.381
SRR8749032	Uninduced	1.186

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.468
SRR8400027	Control - Root	21.747