Gene detail

Gene detail information of Glyur000376s00018681

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41480.1	9.00E-160	Folylpolyglutamate synthetase family protein
NR	KEH40416.1	0	tetrahydrofolylpolyglutamate synthase [Medicago truncatula]
COG	YP_001699560.1	3.00E-58	folylpolyglutamate synthase [Lysinibacillus sphaericus C3-41]
Swissprot	tr\|Q8W035\|FPGS3_ARATH	5.00E-29	Folylpolyglutamate synthase {ECO:0000250\|UniProtKB:Q05932, ECO:0000312\|EMBL:CAC82079.1}
trEMBL	tr\|A0A072VFR4\|A0A072VFR4_MEDTR	0	Tetrahydrofolylpolyglutamate synthase {ECO:0000313\|EMBL:KEH40416.1}

Sequence

Transcript Sequence

>Glyur000376s00018681.1
ATTATATCTCCCTCTTTTTTAATTTGGACTTTCAAGTTTCAATTGCAGGCTGAGAATAGATTTAAATCTATTCTCCTTCCTTTTCTATCTCACTCGCCACTGTTTGGTGGAATCCGATTGTCGTCTATTTTGATTTTTGTTTTATTACCGAAGGAGATAAAAAGGAAGGTTCAGTTAACTACGTCGTCGAAGCAGAGGCAGTGGCGTCAGTGAATCCGTTTCCGTTTTGGGAACCTCCCTNCTGCACTGTGGTAAGCAGAATCGAATCGTGAGGACTCATGCTTCTGCATAGCAGGACTTTTCTGTCCACATTACACACAGGAATCGCGAGGCAAATGCGTCTCGCAGTACGAACCCTGTGTTCGCACCCAGAGGACCCAGAAATGAAAGACTTGCTTGACTACATTGATTCCCTGAAAAACTACGAGAAATCAGGGGTCCCCACAGGAGCAGGCACCGACTCCAATGAGGGCTTCGATCTTTCTAGAATGAGGCGCCTAATGGAGCGTTTTGGTAATCCTCACTCCAAGTTCAAGGCTGTTCATATTGCTGGGACTAAAGGAAAAGGATCAACAGCTGCTTTTATATCTAATATTCTGAGGACTGAAGGTTATTCTGTTGGTTGTTATACTAGTCCACATATCCAGACTATCAGGGAACGCATTCTACTAGGAAGATCAGGGGATCCTGTTTCAGCGAAATTGATGAATGATCTATTTCACAGGATCAAGAAGGATCTTGACCAAGCAATGAAAGGGGAGAATGGTCACNTAAGCCATTTTGAGGTTTTCACTGCCATGGCATTCATCCTATTTGCTGACGAGAANGTTGACATTGCAGTTATTGAGGCTGGGTTAGGAGGTGCACGGGATGCAACAAATATTATATCAAGCTCTGGACTTCATGCAGCTGTCATAACCACTGTAGGTGAGGAACATTTGGCAGCTCTTGGGGGTTCTTTGGAAACTATTGCAATGGCAAAGGCAGGAATCATAAAACAAGGCTGTCCAGTTAGTGCTGTGACATCAAATAGGAAGAAGCCGAATGTTTCTTCTACTTTAGTGTTGGGTGGGCCNTTTCTCCCTCATATTGAGCACATTATTCGAGATAAAGCAGTAACCATGGATTCACCTGTAGTGTCAGCATATGATACTGGGAATAGGTTTATGGTAAAAAGTTTCAGCATACTCAATGGCAGGCCTTGTCAAATTTGCGATATAGAGATACAAANTGTAAAAGACTTGACACTGTCCTGTAAGTTACATGATGTGAAGCTGCAAATGCTTGGAGGTCACCAACTTCAAAATGCAGTAACTGCTACTTGTGTGGCACTCTGTCTTCGTAATTTAGGGTGGAGAATTTCTGACGAATCTATTAGGCATGGTTTAGAGCATACACACCTCCTTGGAAGGAGTCAACTCCTAACATCTGAAGAGGCCAAGGTCTTAGGACTTACTGGAGCAACAATACTGCTTGATGGAGCCCACACCAAAGAATCTGCCAAAGCACTGATGAATACAATAAGGATGGTGTTCCCCAAGGCTCGATTAGCTTTTGTTGTTGCAATGGCAAATGACAAAGACCATGTGGGTTTTGCTAGAGAGATTCTCTCAGGTGTATATGTGGAGACAGTTATTTTGACTGAAGCTGCTATTGCGGGAGATGCAGCTCGAACAACTCCAGCTTCTGTGTTGAGAGATTCTTGGATTAAAGCTTCTGAAGAGCTTGGCGTTGGCATCGGTCACGAGGGAATGGCAGAATACGGAGAATTATTAAAGAAAGAGTCAGTAAGCTCTGAAAGCAGCAATTTGTGTGATCGTAATAACACCATATTGGTTACTGAATCGTCTTTAAAGGGTTGCTTGAGAATTGCAAATAAGATTTTGAACACAAGAGGGGATGAGAAGGGTGTTATTGTCTTCACTGGATCTCTGCATATTGTATCCTCAGTCTTAGCTTCTCTTGCTAATTAATTATTAATGTCTTTCTATAGTGAAGATAGTGAAACGGAATTTCCTTGCAGTAACAAACCAAAAGGATTCTTGGATGCCTTCGTATCAACATTGCACAACACTGTTTCAAGGATCCATTAAATTAATTAAATTGTAACCCCTATTCAAGAGTTCTCTAGGACTGGAACTTTGGATGGCGTTACATGAATGATCAACATTTAGTAGCAATGTATTTCTCTAGGACCTAATAAGCTTAAACCAATGTTTTTTGAAATTTGATTGGTCATTAACATATATATCATAAGAAATCAGGTTAATTAGGTGAAATTTTAATTAGTATAGAAGAAGATATTGTATATCCTTTAATAAAATAATGAGAATTTGAATTTCCTATTGATAGTAACAGATTCAAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00376	58136	65189	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K20457	DHFS	EC:6.3.2.12	Folate biosynthesis	map00790
			Folate biosynthesis	map00790

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009396 folic acid-containing compound biosynthetic process

molecular_function

GO:0004326 tetrahydrofolylpolyglutamate synthase activity

GO:0005524 ATP binding

GO:0016874 ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000376s00018681.1	PF08245.7	Mur_ligase_M	90	351	9.40E-10
Glyur000376s00018681.2	PF08245.7	Mur_ligase_M	90	335	6.90E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.164
SRR1783600	control	2.241
SRR1783602	moderate drought stress	2.559
SRR1811619	moderate drought stress	2.478

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.311
DRR006520	Root Summer glycyrrhizin high producing strain	4.226
DRR006521	Root Winter glycyrrhizin high producing strain	9.853
DRR006522	Root Winter glycyrrhizin high producing strain	9.286
DRR006523	Root Summer glycyrrhizin low producing strain	4.356
DRR006524	Root Summer glycyrrhizin low producing strain	4.564
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.323
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.033
SRR2868004	Drought Stress (root)	8.238
SRR2967015	Control (root)	7.719

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.358
SRR9715740	Leaf	6.636
SRR9715741	Leaf	7.126
SRR9715739	Root	0.753
SRR9715742	Root	1.888
SRR9715743	Root	1.797

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.472
SRR8749028	MeJA induced 9h	4.021
SRR8749029	MeJA induced 9h	2.792
SRR8749030	Uninduced	4.426
SRR8749031	Uninduced	1.750
SRR8749032	Uninduced	2.279

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.615
SRR8400027	Control - Root	7.282