Gene detail

Gene detail information of Glyur000376s00018680.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G53300.4	2.00E-83	ubiquitin-conjugating enzyme 10
NR	NP_001236512.1	5.21E-106	uncharacterized protein LOC100499824 [Glycine max]
COG	YP_008797956.1	3.00E-25	ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|P35133\|UBC10_ARATH	2.00E-106	Ubiquitin-conjugating enzyme E2 10
trEMBL	tr\|I3SJW8\|I3SJW8_LOTJA	2.00E-106	Uncharacterized protein {ECO:0000313\|EMBL:AFK40560.1}

Sequence

Transcript Sequence

>Glyur000376s00018680.1
GTGGTGGACCTTCACAAGATTCCTTCAATGACGAGTCATTCTTCGAATCTAATCTAGATAATTAAATAAACTAAATAAAATAATAGCAATAATTAGCCACAACAACAATAATAGAAGAATAATCCGAACCCAATCACAGAGAAGAAAGAGAAGAGAAGTGCATCAATTCCGAAGCCGCACCCACCACAACCATTTATATACAACAACAACTCATTTCCCTTCCCCTTTCCCTCTTTTGATCGCGTTATTCCTCGCAAATCCGAAGGAGNATCTCTCTTGCTTTTTCCCTAGGTTTTCGCGATGGCATCGAAGCGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACTTCCTGCAGTGCCGGTCCCGTTGCCGAAGATATGTTTCATTGGCAAGCAACAATTATGGGTCCTCCGGACAGTCCTTATGCTGGAGGTGTTTTCCTAGTTACTATTCATTTCCCTCCAGATTATCCCTTCAAGCCACCCAAGGTTGCATTCAGGACGAAGGTATTTCACCCAAATATAAATAGCAATGGAAGCATTTGCCTTGACATATTGAAGGAGCAGTGGAGCCCTGCTCTAACCATTTCCAAGGTGTTGCTCTCAATTTGTTCCCTGTTGACGGACCCAAATCCTGATGATCCATTGGTTCCTGAAATTGCTCACATGTACAAGACAGACAGGAACAAGTACGAGTCAACTGCAAGAAGCTGGACCCAGAAATATGCCATGGGCTAACATATGGTATGTGCGAGGGAGAGCCATTTTTACAGTTCAAGTGTCCAGGCCTAACAGCCTTTGTATGAATATTTGTCGTCATCGATTAAGGCCCCTCCAGTTGAAAATGAATCGGGGAAAATATTTCTTATGTTGTTTGTACTGCAAAATGCAACTGCTGCTTTTAGAACTGTGAAATGTAGCCCAATTAAAAGTTTGTTCAATGTTTTAACCATGTATTCAAAGTATCATCTCGTACTTAGAGTACGTTTGGCTTATTTTATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00376	52671	56303	-

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000376s00018680.1	PF00179.21	UQ_con	5	141	1.20E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	896.415
SRR1783600	control	899.676
SRR1783602	moderate drought stress	1158.949
SRR1811619	moderate drought stress	1148.160

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1479.339
DRR006520	Root Summer glycyrrhizin high producing strain	1461.909
DRR006521	Root Winter glycyrrhizin high producing strain	761.766
DRR006522	Root Winter glycyrrhizin high producing strain	739.655
DRR006523	Root Summer glycyrrhizin low producing strain	1850.763
DRR006524	Root Summer glycyrrhizin low producing strain	1858.677
DRR006525	Leaf Summer glycyrrhizin high producing strain	117.223
DRR006526	Leaf Summer glycyrrhizin high producing strain	114.583

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	341.507
SRR2868004	Drought Stress (root)	470.447
SRR2967015	Control (root)	530.529

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	138.463
SRR9715740	Leaf	121.494
SRR9715741	Leaf	197.981
SRR9715739	Root	534.586
SRR9715742	Root	562.362
SRR9715743	Root	565.154

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	545.183
SRR8749028	MeJA induced 9h	242.140
SRR8749029	MeJA induced 9h	506.642
SRR8749030	Uninduced	315.478
SRR8749031	Uninduced	272.129
SRR8749032	Uninduced	618.213

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	398.165
SRR8400027	Control - Root	408.270