Gene detail information of Glyur000375s00022200 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09380.1 | 1.00E-48 | RNA polymerase III RPC4 |
| NR | KHN32433.1 | 2.92E-107 | hypothetical protein glysoja_026327 [Glycine soja] |
| trEMBL | tr|I1LNT8|I1LNT8_SOYBN | 2.00E-107 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G00860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00375 | 175937 | 177907 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000375s00022200.1 | PF05132.9 | RNA_pol_Rpc4 | 142 | 251 | 7.20E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.288 |
| SRR1783600 | control | 4.337 |
| SRR1783602 | moderate drought stress | 5.440 |
| SRR1811619 | moderate drought stress | 5.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.782 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.072 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.977 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.321 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.420 |
| SRR2868004 | Drought Stress (root) | 16.247 |
| SRR2967015 | Control (root) | 17.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.933 |
| SRR9715740 | Leaf | 20.858 |
| SRR9715741 | Leaf | 20.803 |
| SRR9715739 | Root | 3.516 |
| SRR9715742 | Root | 8.592 |
| SRR9715743 | Root | 5.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.981 |
| SRR8749028 | MeJA induced 9h | 26.034 |
| SRR8749029 | MeJA induced 9h | 24.523 |
| SRR8749030 | Uninduced | 19.041 |
| SRR8749031 | Uninduced | 16.116 |
| SRR8749032 | Uninduced | 14.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.892 |
| SRR8400027 | Control - Root | 15.097 |