Gene detail information of Glyur000375s00022199 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25290.1 | 8.00E-32 | DNA photolyases;DNA photolyases |
| NR | XP_004514513.1 | 9.02E-56 | PREDICTED: uncharacterized protein LOC101504892 isoform X2 [Cicer arietinum] |
| COG | YP_007046624.1 | 2.00E-14 | alpha/beta hydrolase [Cyanobium gracile PCC 6307] |
| Swissprot | tr|Q9FFZ1|PPH_ARATH | 2.00E-06 | Pheophytinase, chloroplastic (Precursor) |
| trEMBL | tr|V7AH06|V7AH06_PHAVU | 1.00E-52 | Uncharacterized protein {ECO:0000313|EMBL:ESW03351.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00375 | 157681 | 159452 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000375s00022199.1 | PF12697.2 | Abhydrolase_6 | 28 | 84 | 2.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.888 |
| SRR1783600 | control | 7.529 |
| SRR1783602 | moderate drought stress | 6.127 |
| SRR1811619 | moderate drought stress | 6.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.822 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.719 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.935 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.570 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.202 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.362 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.984 |
| SRR2868004 | Drought Stress (root) | 5.563 |
| SRR2967015 | Control (root) | 9.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.752 |
| SRR9715740 | Leaf | 45.428 |
| SRR9715741 | Leaf | 41.287 |
| SRR9715739 | Root | 0.774 |
| SRR9715742 | Root | 2.274 |
| SRR9715743 | Root | 3.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.053 |
| SRR8749028 | MeJA induced 9h | 2.454 |
| SRR8749029 | MeJA induced 9h | 2.705 |
| SRR8749030 | Uninduced | 2.792 |
| SRR8749031 | Uninduced | 0.849 |
| SRR8749032 | Uninduced | 0.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.936 |
| SRR8400027 | Control - Root | 7.636 |