Gene detail information of Glyur000375s00022193.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60580.1 | 4.00E-30 | C2H2-like zinc finger protein |
| NR | XP_006587702.1 | 3.94E-139 | PREDICTED: zinc finger protein ZAT9-like [Glycine max] |
| Swissprot | tr|Q9M202|ZAT9_ARATH | 2.00E-34 | Zinc finger protein ZAT9 |
| trEMBL | tr|K7LFJ8|K7LFJ8_SOYBN | 1.00E-139 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G36450.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00375 | 97895 | 98824 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000375s00022193.1 | PF13912.1 | zf-C2H2_6 | 8 | 30 | 0.0001 |
| Glyur000375s00022193.1 | PF13912.1 | zf-C2H2_6 | 189 | 213 | 5.50E-08 |
| Glyur000375s00022193.1 | PF13912.1 | zf-C2H2_6 | 241 | 265 | 2.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.034 |
| SRR1783600 | control | 0.837 |
| SRR1783602 | moderate drought stress | 2.240 |
| SRR1811619 | moderate drought stress | 2.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.003 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.327 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.065 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.085 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.670 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.447 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.248 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.828 |
| SRR2868004 | Drought Stress (root) | 1.040 |
| SRR2967015 | Control (root) | 0.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.261 |
| SRR9715740 | Leaf | 0.420 |
| SRR9715741 | Leaf | 0.368 |
| SRR9715739 | Root | 0.019 |
| SRR9715742 | Root | 0.037 |
| SRR9715743 | Root | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.603 |
| SRR8749028 | MeJA induced 9h | 0.937 |
| SRR8749029 | MeJA induced 9h | 0.367 |
| SRR8749030 | Uninduced | 0.288 |
| SRR8749031 | Uninduced | 0.016 |
| SRR8749032 | Uninduced | 0.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.534 |
| SRR8400027 | Control - Root | 0.546 |