Gene detail

Gene detail information of Glyur000375s00022190

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07660.1	0	structural maintenance of chromosomes 6A
NR	XP_004514508.1	0	PREDICTED: structural maintenance of chromosomes protein 6-like [Cicer arietinum]
COG	YP_008797884.1	5.00E-14	conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|Q9FLR5\|SMC6A_ARATH	0	Structural maintenance of chromosomes protein 6A
trEMBL	tr\|A0A072UIF4\|A0A072UIF4_MEDTR	0	Structural maintenance-like chromosomes-protein {ECO:0000313\|EMBL:KEH29437.1}

Sequence

Transcript Sequence

>Glyur000375s00022190.1
CAACTTGCAGCCCAAGTTTGTACTCAACCGAGTGGCGCACTACTACTAGTTCCCGCCACCGAGACTTTTGTAACGCCTCCTCGTAACTCACACCATTCTCTTCTCTCTTCACCCATTCANAATCATCGCTACTATTTCCTGTCCTCTGTGCGCGTTCGAGTGTTCTCTTCGTAGCTTGAAGGGAACATTCTAGAAGAATGAAGCGGGGAAGAGACACATGGGAGGGTAGTAGTAGTACTAGTACTTCTAGGGTTTCCCCTACTCCTCCTCCTCCACAAACCGCAGGCATCATCAAGAGACTTCGATTGGAGAATTTCATGTGNCATTCCAACCACGAGACAGAGTTCGGAAACCACGTCAACTTCATCACTGGCCAAAATGGAAGTGGTAAGAGTGCTATCCTAACTGCATTGTGTGTTGCATTTGGTTGTCGAGCGAAAGGGACTCAAAGGGCATCCACTCTAAAGGACTTCATTAAAACTGGTGCTAGTAATGCTGTCATCCATGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAGCCTGAAATATATGGTGATGTTATCATTGTAGAACGCAGGATATCTGAATCCACAAGCTCTACTACGTTGAAAGATCACCAAGGAAAAAAAGTTTTNGGTCGGAAAGCAGATCTTCAAGAAATCATTGAACATTTCAATATTGATGTGGAGAATCCATGTGTGATTATGAGTCAAGACAAAAGCAGAGANTTTTTGCATTCTGGGAATAACAAGGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTCCTGGAAAGCATTTCCAATGAAATAACTACTGCACATGGAATAGTTGAAGAATTAGAGACTGCAATAAGGCCCATAGAAAAGGAGCTTAATGAGCTGCAGGTTAAAATTAAAACTATGGAACATGTAGAACAAATATCGATACAGGTTCAGGAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTTGAGGAACAAAATGTAAAGATTGAAAAGCTGAAGAATCGGATACCTACCTGCCAAGCTAAGATTGATCAACAACTGCATAAAATTGAAAAATTAATGGAAAGCTGCTCTAAAAAGAAAGCTGAAATTCAAAGCATGTTGGAAACGACATCACAGGTTAAGCAATTGAAGGAAACTTTAAGCCAGTCTATGTCCTTGGCAAAAAAAGAAGCATTTGCGTTGGATCGAGACTGCACATGCAAAATTAACAACATACAAAAGATGGTACAACAACTCAAAATGCTTGAACAACAAATGCAAGATATTCACGAGCAGCATGTAAAGAATACCCAGGCTGAAGAATCTGAAATGGAGGAGAAACTAAAGGGGCTTCAAGATGAGGTTCATGCCGCTGATTTAGAGCTGAAAAGTTTGAAAGAAGAACAGGATACGTTAAGAAACAGCATGAATAGGCAAAATGATGAAATGAGGAAGATTGATGATAAGATTCAAGATCATGTAAAAAATTATCAGCATATCANGCGTAGTATTCATAGTCTTCAGCAACAACAAAGCAACAAGATTGANGCTTTTGGAGGAGGAAAAGTGATGAATCTGTTACGTACAATTGAAAAATATCATCAAAGGTTTAAGATGCCCCCGATTGGTCCAATTGGTGCCCATCTGAAGTTGCTTAATGGTAATAAATGGGCTGTTGCCGTTGAATATGCTATTGGGAGAATGCTCAATTCTTTTATAGTGACTGATCACAAGGATTTTCGTCTTCTAAAACAATGTGCGAAGGAAGCAAACTATGGTCACCTTCAAATTATTATTTATGATTTTTCAATTCCAAGGTTGATGATATCAGAGCACATGCTTCCTCATACAAAACATCCATCAACTCTTTCCATCTTACAGTGCGAGAATCACACTGTTATTAATGTCCTAGTGGATCTGGGGAGTGTTGAGAGACAAGTGCTTGTTGACGACTATGATATTGGGAAAGTTGTTGCATTTGAACAAAGGATCCCAAATCTGAAGGAGGTCTTCACGGCGAAGGGAGATAGATTGTTTTCTCGAGGTTCAGTACAGACAACTCTTCCTGCAGGTAAGAGGCCAAGAGTGGGTCGTCTAAGTAGTTCTGTTGAAGGTGACATTGAGAAACTTCATAATGAAGCATCCAATGAACAAAAGGCAGCTAATGACTATAAGAGGAATAAAAGAGAGGCAGAGATCAAGCTTGATGAGCTTGACAAGAAGATGAATTCTTTGAAGAGGCTTTGTGCAAATGCTGGAAAATGTTTAACTTCTAAGAAGCTAGCATTGGAGGAGGCAATGCATCAACATGCNGCTGAAAGTAGCTCGACACCTTTGTCCTCAGTTGATGAGATTGGTGAAGCGATTTCAGATGTCCAGAAAAAAATAAAAGAGGAGGAGGTTTTATTGAAAGGCCTTGAGCAGAGGAGGCATGATGCAGCGGAAAAAGCAGATGATTTCAAAGTAAAATTTGACAAACTGTGTGAATCAGCAAATGGGGAAATTGCGGCCCTTGAGAAAGCTGAGAGAGAACTTGTGGAGATTGAGAGNGAAATGGATTCGGAAAAAAAGGCGAAGGATCACTATGATGGTATCATGAAAAACAAGGTCCTACCTGATATTAGGGAGGCAGAGGAAAACTATCTGGAGCTTACAAAGATGCGTGAGGTGAATGTTGAAAAGGCTTCCATAATTTGCTGTCAGAACGAACTTGCTTCTTTAGGAGGTTGTGATGGGAATACACCAGAGCAAATTAGTTCTCAATTAGAAAGACTAAATCAGACACTTAGGCGTACTCCGAATCAATTGATGATTTGAGGATGCTGTATGCAAAAAAAGAACGCAAGATTATAAAAAGGCAGCAAGTTTACAAAGCCCTTCGACAGAAGTTGGATGCTTGCCAGAGAGCTTTACAGTTACGAAGGAGCAAGTTTCAGACAAATGCAACTTATCTGAAGCATCAGCTTTCTTGGAAATTTAATGACCATTTGAGAAAGAAAGGGATCAGTGGACATATCAGAGTTGATTATGAGGAGAAAACCCTATTGATTGAGGTACAGATGCCCCAAGATGCTTCAAACAGAGCTGTTCGAGACACTAGGGGGCTTTCAGGTGGAGAGCGTTCCTTTTCAACAATGTGCTTTGCATTAGCCCTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTTATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACTCTGGTTGATTTTGCTGAGGCGCAAGGATCCCAGTGGATATTCATCACCCCGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00375	55267	91117	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000724 double-strand break repair via homologous recombination

GO:0006281 DNA repair

GO:0051276 chromosome organization

cellular_component

GO:0005694 chromosome

GO:0030915 Smc5-Smc6 complex

molecular_function

GO:0005515 protein binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000375s00022190.1	PF13476.1	AAA_23	34	290	1.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.814
SRR1783600	control	3.841
SRR1783602	moderate drought stress	5.200
SRR1811619	moderate drought stress	5.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.274
DRR006520	Root Summer glycyrrhizin high producing strain	6.218
DRR006521	Root Winter glycyrrhizin high producing strain	6.920
DRR006522	Root Winter glycyrrhizin high producing strain	6.713
DRR006523	Root Summer glycyrrhizin low producing strain	6.608
DRR006524	Root Summer glycyrrhizin low producing strain	6.727
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.312
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.269

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.862
SRR2868004	Drought Stress (root)	10.209
SRR2967015	Control (root)	9.851

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.777
SRR9715740	Leaf	2.109
SRR9715741	Leaf	2.291
SRR9715739	Root	0.208
SRR9715742	Root	1.228
SRR9715743	Root	1.729

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.288
SRR8749028	MeJA induced 9h	27.732
SRR8749029	MeJA induced 9h	29.326
SRR8749030	Uninduced	3.971
SRR8749031	Uninduced	4.256
SRR8749032	Uninduced	5.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.579
SRR8400027	Control - Root	11.109