Gene detail information of Glyur000375s00022188.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G07670.1 | 4.00E-152 | RNI-like superfamily protein |
| NR | KEH29445.1 | 0 | F-box-like protein [Medicago truncatula] |
| Swissprot | tr|Q8VYT5|FB254_ARATH | 0 | F-box protein At5g07670 |
| trEMBL | tr|A0A072UUB0|A0A072UUB0_MEDTR | 0 | F-box-like protein {ECO:0000313|EMBL:KEH29445.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00375 | 46381 | 48495 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.993 |
| SRR1783600 | control | 10.608 |
| SRR1783602 | moderate drought stress | 6.880 |
| SRR1811619 | moderate drought stress | 7.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.348 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.387 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.438 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.109 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.119 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.994 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.337 |
| SRR2868004 | Drought Stress (root) | 14.653 |
| SRR2967015 | Control (root) | 15.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.386 |
| SRR9715740 | Leaf | 6.031 |
| SRR9715741 | Leaf | 6.593 |
| SRR9715739 | Root | 7.221 |
| SRR9715742 | Root | 8.288 |
| SRR9715743 | Root | 9.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.747 |
| SRR8749028 | MeJA induced 9h | 19.532 |
| SRR8749029 | MeJA induced 9h | 19.873 |
| SRR8749030 | Uninduced | 5.696 |
| SRR8749031 | Uninduced | 7.031 |
| SRR8749032 | Uninduced | 6.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.150 |
| SRR8400027 | Control - Root | 17.416 |