Gene detail

Gene detail information of Glyur000374s00017966

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03230.1	0	S-locus lectin protein kinase family protein
NR	XP_006592402.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230-like isoform X1 [Glycine max]
Swissprot	tr\|Q9ZR08\|Y4230_ARATH	8.00E-159	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 (Precursor)
trEMBL	tr\|K7LU18\|K7LU18_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G11220.2}

Sequence

Transcript Sequence

>Glyur000374s00017966.1
CTTTACTTATAGATGATGGATGGCCTTTGAATTCAACTAGTGCTAACCATTTTGCATTCTGTCATATGGTAAACACCAAGAGAGAGATCAGGAGGATAATTATCCTTAACTGCTCTTCTAGTCACAATGTTGTCTATCTTCCTTTTGTGCTTATTCTTTTTCACATTCAAACATTGCTTAGCTATAGATACCATAACCATTAACAACTTCTTACGAGATGGGGGAGTGGAAACTCTCATTTCAGAAGGAGAAAGTTTTGAACTTGGTTTCTTCACTCCCAATGGAAGCTCTGGTGGTGGCAGAAGAAGATACGTTGGAATATGGTACCACAAGTTAACTCCACAAACAGTTGTTTGGGTTGCTAACCGAGACAACCCACTTCCAGATTCTGGGGGTGCTTTTGGCATTNCACAAGATGGGAATCTCAGGGTTTTGGACAGTAGTGGGAAATCCNACTGGGGAACAAATCTTGAAAGACCATCATCATCTTCACAGCACAGGACAGTGAAACTATTGGACAGTGGGAACCTTATTGTTGTGAGTGAAACTGATGAAGACCAAGGAAGAGTGAAGATTCTGTGGCAGAGTTTTGCTAACCCCACAGATACATTTCTTCCAGGCATGAGAATGGATGAGAGTTTAGCATTAACTTCATGGGGAAGTTATGAAGACCCTTCACCAGGGAACTTCTCTTTTGAGCAAGATCAAGGAGAGAACCAGTACATCATATGGAAGAGATCCATCAGGTATTGGAAAAGCAGTGTATCAGGCAAATTTGTTGGAACTGGTGAGATGTCTTCAGCAATATCTTACCTGTTGTCAAATTTCACCTTGAAGATATCCCCAAACAACACTGTTCCCTTTCTCACTTCATCACTGTATAGTAACACAAGGTTGGTTATGACTTANTGGGGTCAACTTCAGTACCTGAAGATGGATTCAGAGAAAAAGTGGTTGTTAGTTTGGGTAGAGCCAAGAGACAGATGCAGTGTGTTCAATGCCTGTGGAAACTTTGGCAGCTGTAATAGTAAGTATGATTCTATGTGCAAGTGTTTGCCTGGGTTCAAGCCTAATTCTCTTGAAAGTTGGAATTCTGGAGACTTTTCAGGTGGATGTAGCAGGGAAACAAATGTGTGTAGCGAGAGTGCTAAGAGTGACACATTTTTGAGCCTTAAAATGATGAAAGTNGGGAACCCGGACGCTCAATTTAATGCCAAGAATGAACAGGAATGCAAGTCAGAATGCCTCAACAATTGCCAGTGCTATGCATACTCATATGAAGACACTGATGCGCCAGCAAGGCAGGGTGATAGTGGGGATGCAGTTTGCTGGATTTGGTCTGAGGACTTGAACAATCTTGAAGAAGAGTATGAGGGTGGCTGTGACTTGCATGTTCGAGTGGCATTTTCTGATATAGAATCCACTGGGAGCAGTTGTGGGACTTGTGGCACAAACTTCATTCCATATCCCCTTAGCACAGGACCACACTGTGGTGACCCCATGTACTTCAGTTTCCACTGCAACAATTCCNCTGGTGAGCTTGAATTTGAGACTCCTGGGGGCACTCATCAAGTGATAAGCATAAACCCAGAAACACAGAAATTCTTGATCCACCGAGAAAATGTACTCAACTGTGATGGTCAAAGTTCAAGGGACAAGCTTCTGCTTCTCAACCAGTCATCTCCATTTCATNTTACTGGCAATTGCTATGCTGATCCAAGCACCTTTAGTTCTAATAATGCTCCCCGGAAACATGGAGTAGAAATAGAATTAAGTTGGGAGCCACCATTAGAGCCAACTTGTTCTTCATTGCTGGACTGCAAGGACTGGCCAAATTCAACTTGCAATACTACCAGTGATGGGAAGAAGAGATGCCTTTGCAATAAAAACTTTCTTTGGGATGGCTTGAAATTAAATTGTACTCAAGAAGGCAAAAGCTACCAAACAGAAAGGCATATGTCCTCACCAAAGATCATTGCTGTCACTTTTACAGCCGTGATTTTCTTAATTATTCTCTCAACTACTGTTACATGTATTTGCTTGTGGAAAAGGAGACAGACCAAGACACAAGAAAGCAAGAGATATGTTCAGAAAAACTCGGGGATTAACTTGTATGACAGTGAGAAATATATGGTGCGGAGGAGTGCGGACACTGCTAATGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00374	162598	167963	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

molecular_function

GO:0005515 protein binding

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000374s00017966.1	PF01453.19	B_lectin	72	184	7.50E-26
Glyur000374s00017966.1	PF00954.15	S_locus_glycop	215	316	2.30E-20
Glyur000374s00017966.1	PF08276.6	PAN_2	341	410	4.60E-13
Glyur000374s00017966.1	PF13947.1	GUB_WAK_bind	437	511	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.475
SRR1783600	control	23.560
SRR1783602	moderate drought stress	19.054
SRR1811619	moderate drought stress	19.091

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.366
DRR006520	Root Summer glycyrrhizin high producing strain	9.914
DRR006521	Root Winter glycyrrhizin high producing strain	0.235
DRR006522	Root Winter glycyrrhizin high producing strain	0.202
DRR006523	Root Summer glycyrrhizin low producing strain	11.847
DRR006524	Root Summer glycyrrhizin low producing strain	12.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.588

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.222
SRR2868004	Drought Stress (root)	13.097
SRR2967015	Control (root)	16.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.735
SRR9715740	Leaf	0.989
SRR9715741	Leaf	2.710
SRR9715739	Root	3.144
SRR9715742	Root	18.247
SRR9715743	Root	14.108

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.829
SRR8749028	MeJA induced 9h	3.270
SRR8749029	MeJA induced 9h	1.414
SRR8749030	Uninduced	0.359
SRR8749031	Uninduced	0.189
SRR8749032	Uninduced	0.122

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.384
SRR8400027	Control - Root	48.747