Gene detail information of Glyur000374s00017965 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27280.1 | 2.00E-34 | Calcium-binding EF-hand family protein |
| NR | XP_004513552.1 | 6.09E-67 | PREDICTED: calcium-binding protein PBP1-like [Cicer arietinum] |
| Swissprot | tr|Q9LSQ6|PBP1_ARATH | 6.00E-43 | Calcium-binding protein PBP1 |
| trEMBL | tr|I3SNX6|I3SNX6_LOTJA | 3.00E-67 | Uncharacterized protein {ECO:0000313|EMBL:AFK41968.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00374 | 160112 | 160486 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000374s00017965.1 | PF13833.1 | EF-hand_8 | 42 | 95 | 1.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.994 |
| SRR1783600 | control | 2.871 |
| SRR1783602 | moderate drought stress | 1.822 |
| SRR1811619 | moderate drought stress | 1.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 70.394 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 70.387 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.595 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.581 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 124.868 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 126.914 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.008 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.222 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.499 |
| SRR2868004 | Drought Stress (root) | 53.589 |
| SRR2967015 | Control (root) | 50.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.444 |
| SRR9715740 | Leaf | 62.200 |
| SRR9715741 | Leaf | 51.365 |
| SRR9715739 | Root | 104.629 |
| SRR9715742 | Root | 170.359 |
| SRR9715743 | Root | 137.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 300.801 |
| SRR8749028 | MeJA induced 9h | 148.811 |
| SRR8749029 | MeJA induced 9h | 608.185 |
| SRR8749030 | Uninduced | 1272.372 |
| SRR8749031 | Uninduced | 972.459 |
| SRR8749032 | Uninduced | 663.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.339 |
| SRR8400027 | Control - Root | 82.576 |