Gene detail information of Glyur000374s00017963 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54510.1 | 0 | Auxin-responsive GH3 family protein |
| NR | XP_003540863.1 | 0 | PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] |
| COG | YP_003444757.1 | 2.00E-21 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|Q9LSQ4|GH36_ARATH | 0 | Indole-3-acetic acid-amido synthetase GH3.6 |
| trEMBL | tr|I1LRV0|I1LRV0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G11200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00374 | 142169 | 144935 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000374s00017963.1 | PF03321.8 | GH3 | 38 | 123 | 7.50E-26 |
| Glyur000374s00017963.1 | PF03321.8 | GH3 | 124 | 565 | 5.50E-149 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.055 |
| SRR1783600 | control | 0.082 |
| SRR1783602 | moderate drought stress | 0.101 |
| SRR1811619 | moderate drought stress | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.124 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.121 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.122 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.448 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.557 |
| SRR2868004 | Drought Stress (root) | 2.476 |
| SRR2967015 | Control (root) | 3.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.768 |
| SRR9715740 | Leaf | 0.141 |
| SRR9715741 | Leaf | 0.408 |
| SRR9715739 | Root | 0.138 |
| SRR9715742 | Root | 0.342 |
| SRR9715743 | Root | 0.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 259.033 |
| SRR8749028 | MeJA induced 9h | 218.499 |
| SRR8749029 | MeJA induced 9h | 89.855 |
| SRR8749030 | Uninduced | 3.059 |
| SRR8749031 | Uninduced | 1.049 |
| SRR8749032 | Uninduced | 2.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.487 |
| SRR8400027 | Control - Root | 0.600 |