Gene detail

Gene detail information of Glyur000374s00017954.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15210.1	0	beta-amylase 5
NR	O22585.1	0	RecName: Full=Beta-amylase; AltName: Full=1,4-alpha-D-glucan maltohydrolase [Medicago sativa]
COG	YP_004639885.1	2.00E-52	thermophilic beta-amylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|O22585\|AMYB_MEDSA	0	Beta-amylase
trEMBL	tr\|A0A072UUL3\|A0A072UUL3_MEDTR	0	Beta-amylase {ECO:0000256\|RuleBase:RU000509}

Sequence

Transcript Sequence

>Glyur000374s00017954.1
GCGTGTATAGCGNGGCGCGCATTGCTAAACCTTGCACAGTTGCACATTGTGATTGTGCCAGCGAGAGCTAAAAATGGGGCTACCTACAGCGTTATTACATTACATCCCTTTATTCTTTTCCTTTTATGGTACAATTATTCTTTTTCATTTTTTTCTTTCTTCTTCTTCTATATAATAACAAGCACCGCCTCGTATCGTGACTTCAAAGCAAGCAGCAGCATCGTCTCCGTAGCTTTTCTCTCTTCCCATCTTTCATAGATATCAGAGAACTTTGAAATTCGCTTAGTGCTGGAAATAAACAATAACAGTAATAACAGGAAGATGGCCACTTCTGACAAAAACATGCTGCTGAATTATGTTCCAGTTTATGTCATGCTCCAACTCGGAGTTGTGAATGTTAATAATGTGTTTGAAGACCCAGATGGCCTTAAAGAACAGCTGGTGCAGCTACGAGCAGCGGGTGTTGATGGGGTTATGGTTGATGTGTGGTGGGGGATCATTGAACAGAAGGGGCCTAAGCAGTATGATTGGAGTGCCTATAGGAGCTTGTTCCAACTGGTTCAGGAATGTGGCTTGAAACTGCAAGCTATCATGTCATTCCATCAATGTGGAGGGAACGTTGGGGATGTTGTTACCATCCCAATTCCCCAGTGGGTACTTGACATTGGAGAATCCGATCCTGATATCTTCTACACCGACCGCTCCAGTACCAGGAACAAGGAATATCTAACTATTGGTGTGGATGACAAGCCCATCTTCCATGGAAGAACAGCCGTTGAGGTATACAGTGACTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAGAGTCTGAGCTTATTATAGACATTGAAGTTGGGCTTGGCCCGGCAGGAGAACTCAGATACCCCTCTTATCCACAAAGCCAAGGATGGGAATATCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTAAAGGAAGATTTCAAAGCGGCTGCAGCAAGGGCTGGCCATTCTGAATGGGAACTGCCAGATGACGCAGGCAAGTACAATGATGTACCAGAATCTACTGAATTCTTCAAGACAAATGGCACATACCTCACNGAGAAAGGGAAGTTCTTCTTAACTTGGTATTCAAACGAATTGCTGAATCATGGGGATCAAATCCTAGACGAAGCCAACAAAGCTTTCCTGGGCTGTAAAGTCAAATTAGCAATCAAAGTCTCTGGAATCCACTGGTGGTACAAAGCTGAGAATCATGCTGCTGAGCTCACTGCTGGATATTACAACCTCAGGGATAGAGATGGATACCGTCCGATTGCAAGAATGTTGTCCCGCCATCATGCCATTTTGAACTTTACATGTCTTGAGATGAGGGACTCAGAACAAAGCTCTGACGCCCAAAGTGCACCAGAGGAACTTGTTCAGCAGGTATTGAGTGGAGGTTGGAGAGAAAACATTGAAGTTGCTGGAGAAAATGCACTTTCAAGGTATGATGCCACAGGTTATAACCAAATCATACTGAATGCAAGACCACAAGGTGTCAACAAAAACGGCCCTCCAAAACTTCGGATGTATGGAGTAACATACCTTCGTCTGTCAGATGATCTATTGCAACAATCAAATTTTGATATATTCAAAAAATTTGTGCTAAAGATGCATGCAGATCAGGATTACTGTGAAGACCCTCAAAAGTACAATCATGCCATACCACCATTGAAGCCATCAGAACCAAAGATTCCCAATGAGGTTCTTCTTGAAGCAACTAAACCAATACCACCATTCCCCTGGATGTCAGAGACAGACNTGAAAGTTGACGGTTGACTTCCCAATTCAACGGGAAGAATGGTTAAAGAATCAGCTGGAAATAATATCTACCGTTCAGGATATGAATAAAGCACCTACATATGCAGTGCTAAATGCTAATAGTATTCCCATAATGAAGCAATGTCTAGACGTCTAGACATATCTACTCGTGTGTACTTTCATATGTGTGTTTTCCTATCTACGAATTTAATAAACTATTTTATCGAATCACTCGACTCTGCTTATCAAGAGATGAACACTACCATCTCTAAAAAAAAGTGAAAGATACCTATTCAAATAGCATATTTTCAGAATCATCTTACAGCAGCGGGTAAATGACTGTCAGATTATGTCAAAAGCACCTTATGGGGAAGGGGGGGGGGTCTATATTTAAATAGGGAATGTAGAACTTTATCCCCAAAAACAATCCAATAAGAGATGATCAGACACACACACAATCCGTAATAAACCTGTAGAACTCATCTAGTATAATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00374	110736	113815	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000272 polysaccharide catabolic process

GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016161 beta-amylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000374s00017954.1	PF01373.12	Glyco_hydro_14	16	435	3.40E-120

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3204.704
SRR1783600	control	3217.226
SRR1783602	moderate drought stress	2381.205
SRR1811619	moderate drought stress	2363.783

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	902.794
DRR006520	Root Summer glycyrrhizin high producing strain	893.552
DRR006521	Root Winter glycyrrhizin high producing strain	84.328
DRR006522	Root Winter glycyrrhizin high producing strain	81.940
DRR006523	Root Summer glycyrrhizin low producing strain	247.176
DRR006524	Root Summer glycyrrhizin low producing strain	247.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.797
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.659

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.948
SRR2868004	Drought Stress (root)	45.271
SRR2967015	Control (root)	15.534

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.988
SRR9715740	Leaf	6.582
SRR9715741	Leaf	4.075
SRR9715739	Root	233.292
SRR9715742	Root	557.123
SRR9715743	Root	476.175

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.441
SRR8749028	MeJA induced 9h	5.270
SRR8749029	MeJA induced 9h	10.083
SRR8749030	Uninduced	4.374
SRR8749031	Uninduced	5.281
SRR8749032	Uninduced	3.384

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1771.739
SRR8400027	Control - Root	2035.160