Gene detail information of Glyur000374s00017950 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22104.1 | 4.00E-122 | Phototropic-responsive NPH3 family protein |
| NR | XP_003527477.1 | 0 | PREDICTED: BTB/POZ domain-containing protein At3g22104-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9C5J4|Y3210_ARATH | 6.00E-159 | BTB/POZ domain-containing protein At3g22104 |
| trEMBL | tr|I1KF99|I1KF99_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G45770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00374 | 76917 | 80808 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000374s00017950.1 | PF00651.26 | BTB | 9 | 111 | 6.00E-06 |
| Glyur000374s00017950.1 | PF03000.9 | NPH3 | 196 | 422 | 1.60E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.485 |
| SRR1783600 | control | 3.598 |
| SRR1783602 | moderate drought stress | 4.412 |
| SRR1811619 | moderate drought stress | 4.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.338 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.263 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.120 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.561 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.557 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.312 |
| SRR2868004 | Drought Stress (root) | 23.436 |
| SRR2967015 | Control (root) | 21.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.542 |
| SRR9715740 | Leaf | 29.740 |
| SRR9715741 | Leaf | 20.793 |
| SRR9715739 | Root | 6.005 |
| SRR9715742 | Root | 10.673 |
| SRR9715743 | Root | 8.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.650 |
| SRR8749028 | MeJA induced 9h | 1.450 |
| SRR8749029 | MeJA induced 9h | 1.933 |
| SRR8749030 | Uninduced | 1.745 |
| SRR8749031 | Uninduced | 0.088 |
| SRR8749032 | Uninduced | 0.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.593 |
| SRR8400027 | Control - Root | 14.708 |