Gene detail information of Glyur000374s00017938.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36710.1 | 3.00E-63 | GRAS family transcription factor |
| NR | XP_004509243.1 | 8.71E-137 | PREDICTED: scarecrow-like protein 15-like [Cicer arietinum] |
| Swissprot | tr|O23210|SCL15_ARATH | 8.00E-75 | Scarecrow-like protein 15 |
| trEMBL | tr|G7LEV2|G7LEV2_MEDTR | 1.00E-130 | GRAS family transcription factor {ECO:0000313|EMBL:AET03955.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00374 | 5276 | 6127 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000374s00017938.1 | PF03514.9 | GRAS | 73 | 265 | 4.30E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.509 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.438 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.383 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.417 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.723 |
| SRR2868004 | Drought Stress (root) | 8.667 |
| SRR2967015 | Control (root) | 3.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.816 |
| SRR8749028 | MeJA induced 9h | 0.767 |
| SRR8749029 | MeJA induced 9h | 0.758 |
| SRR8749030 | Uninduced | 0.043 |
| SRR8749031 | Uninduced | 0.394 |
| SRR8749032 | Uninduced | 0.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |