Gene detail information of Glyur000373s00018549 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07070.1 | 3.00E-57 | Ribosomal protein L35Ae family protein |
| NR | XP_011036020.1 | 9.38E-75 | PREDICTED: 60S ribosomal protein L35a-1 [Populus euphratica] |
| COG | NP_126076.1 | 3.00E-10 | 50S ribosomal protein L35Ae [Pyrococcus abyssi GE5] |
| Swissprot | tr|Q9LMK0|R35A1_ARATH | 6.00E-73 | 60S ribosomal protein L35a-1 |
| trEMBL | tr|A0A067LKI6|A0A067LKI6_JATCU | 7.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:KDP44839.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00373 | 170731 | 172797 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000373s00018549.1 | PF01247.13 | Ribosomal_L35Ae | 12 | 106 | 9.50E-44 |
| Glyur000373s00018549.2 | PF01247.13 | Ribosomal_L35Ae | 12 | 106 | 9.50E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 95.871 |
| SRR1783600 | control | 96.100 |
| SRR1783602 | moderate drought stress | 67.025 |
| SRR1811619 | moderate drought stress | 67.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 300.994 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 299.959 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 106.628 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 103.443 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 311.564 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 306.950 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 149.492 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 147.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 436.019 |
| SRR2868004 | Drought Stress (root) | 254.636 |
| SRR2967015 | Control (root) | 224.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 170.081 |
| SRR9715740 | Leaf | 158.783 |
| SRR9715741 | Leaf | 141.572 |
| SRR9715739 | Root | 109.315 |
| SRR9715742 | Root | 121.089 |
| SRR9715743 | Root | 111.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 335.810 |
| SRR8749028 | MeJA induced 9h | 123.404 |
| SRR8749029 | MeJA induced 9h | 219.378 |
| SRR8749030 | Uninduced | 46.841 |
| SRR8749031 | Uninduced | 51.634 |
| SRR8749032 | Uninduced | 54.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 291.133 |
| SRR8400027 | Control - Root | 230.717 |