Gene detail

Gene detail information of Glyur000373s00018547

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27610.1	2.00E-127	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004504658.1	0	PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Cicer arietinum]
Swissprot	tr\|Q9ZUW3\|PP172_ARATH	4.00E-146	Pentatricopeptide repeat-containing protein At2g27610
trEMBL	tr\|A0A072UNN0\|A0A072UNN0_MEDTR	0	Pentatricopeptide (PPR) repeat protein {ECO:0000313\|EMBL:KEH31404.1}

Sequence

Transcript Sequence

>Glyur000373s00018547.1
ATGAGCATCACCGTTTCACACTGGCTGCACCAACCTTGTCATCACTCTCGTGCTTCCACAAACAAAGTAGGCACGCGTCACCACCACCCTACGCCTATTCTCGTTGTGCCGCAGGCTCCAACGCTTTCAAAGCCCCCTGCACTTGCAGCCGCTGAAACACGCGAACAACCCAGCAATATTCGACCACTCATTGATCTCTTAAAGGCCTGCGGAGAAAGTGGGTCTCTCAAACAGGCGAATTGCATTCATGGGCATNTTTTAAAATCGGGTTTTGGTGACCGGGACTTGCTGGTGTTTCTGAACCACGCAGCTCACGTGTACTCCAAATGCATGGATTACGATGCTGCTCGTAGGGTGTTCGATGGTATGTCTCAGAGAAATGTGTTTTCTTGGACCGTCATGATTGTCGCGTCGAATGAACGTGGCTACCACCGCGACGGGGTGGAGCTGTTTTGCATGATGTTGGAACAAGGTGTGTTGCTTGATGGGTTTGCCTTCTCTGCTGTTTTGCAGTCTTGTGTCGGGTTAGATTCCATCGAGTTGGGTGAGATGGTGCATGCACAAGTTGTTGTCAGGGGTTTTCTGATGCATGCCGTTGTTGGGACATCTCTTCTCAACTTGTATGCAAAGCTAGGAAAGAGTGAGTGTTCAGTTAAGGTGTTTAACACCATGACTGAGCTTAATGATGTTTCTTGGAATGCAATGATTTCTGGGTTTACCTCTAATGGTCTACACCTACAAGCATTCGATTGTTTTATCAACATGATTGAAGCTGGGGTCACACCTAATAGCTCCACCTTTTTAAGTGTTTCCAAGGCAGTTGGGCAGTTAGGTGACCTTAACAAGTGCCATGAAGTTCACGGGTATGCTTCTGAATGGGGATTGGATTGCAATGCTTCTGTTGGAACAGCTCTTATTGATATGTACTCTAAGTGTGGGTCTCTGTCTGATGCGCGAGTTCTTTTTGATTCGAACTTCATGAATTGTCTGGTTAACACACCTTGGAATGCAATGATAACGGGTTATTCACAAGCTGATTGTCACCTAGAAGCTTTGGAATTGTTCACAACAATGTGCCAAAATGATGTCAAACCAGATGTTTACACATTCTGTTGTGTGTTCAACTCAATTGCTGCTTTGAAGTGTCAGAAATCCTTAAAGGAGACTCATGGGGTGGCTTTGAAATGTGGATTCGATGCGACAGAAACTAGTGCATCGAATGCCCTTGCCGATGCATATGTCAAATGTGAGTCACTTGAAGCTGGAGAGGAGGTATTTGATGGAATGGAAAAGAAAGATATAGTATCTTGGACAACCATGGTGACTGCATATTGTCAATATTCTGAGTGGGGGAAAGCCTTGTCCATCTTCTCACTGATGCGCAATGAAGGCGTTGCACCCAATCATTTTACCTTTTCTGGTGTGATTACAGCATGTGGTGGTCTTTGTTTACTAGAATATGGCCAGCAAATTCATGGGTTGATATGCAAGGCAAGCTTGGATACTGATACATGCATAGAAAGTGCTCTAATTGACATGTATGCTAAATGTGGTAACCTGAAGGAGGCAAAGAAGATATTTGAAAGGATATCTAACCCAGACACTGTAACTTGGACTGCCATAATATCCACTTATGCTCAACATGGTCTTGTTGAAGATGCCCTTCAACTCTTCAGAAAGATGGAACGGTCGGCTGCGAAAGTCAATGCTGTTACATTATTATGCATCCTTTTTGCCTGTAGCCATGGGGGAATGGTGGAGGATGGCCTGAAGATTTTCAATCAAATGGAGGACACCTATGGGGTGGTACCAGAAATGGAACATTATGCTTGTGTTGTTGATCTCTTAGGTCGCGTTGGCCGCTTGGATGAAGCGGTGGAATTCATCGACAGAATGCCGATCGAGCCGGACGAAATGGTTTGGCAGGCCTTGTTAGGAGCATGTAGGATTCATGGAAATGCTGAATTGGGGGAGACTGCTGCTCAAAAGATTCTGTCTATCCGACCGGAATATCCTTCTACCTATGTTCTTTTGTCCAACACATACATGGAATCAGGGCTACATGAAAACGGGGTTAGTTGGAGAGATGTGATGAAAGAACGAGGCATTAGAAAGGAACCCGGGTATAGTTGGATTACTGTGAGAGGTGAGGTTCATAAGTTTTATGCTAGAGATCAACAGCATCCCCAGAAAGATAAAATCTACACTATGTTAGAGGAGTTGACGAGGCATATTAAGTACATGCGTAATGAACCAGAATTTTGCTTTATTTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00373	161533	163809	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000373s00018547.1	PF01535.15	PPR	129	159	0.087
Glyur000373s00018547.1	PF01535.15	PPR	202	227	0.16
Glyur000373s00018547.1	PF13041.1	PPR_2	228	269	2.00E-08
Glyur000373s00018547.1	PF01535.15	PPR	303	323	0.5
Glyur000373s00018547.1	PF13041.1	PPR_2	335	376	1.40E-08
Glyur000373s00018547.1	PF13041.1	PPR_2	432	479	1.70E-10
Glyur000373s00018547.1	PF01535.15	PPR	508	530	0.0018
Glyur000373s00018547.1	PF13041.1	PPR_2	533	579	3.60E-09
Glyur000373s00018547.1	PF01535.15	PPR	609	632	0.15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.146
SRR1783600	control	2.192
SRR1783602	moderate drought stress	3.670
SRR1811619	moderate drought stress	3.638

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.571
DRR006520	Root Summer glycyrrhizin high producing strain	2.645
DRR006521	Root Winter glycyrrhizin high producing strain	2.341
DRR006522	Root Winter glycyrrhizin high producing strain	2.385
DRR006523	Root Summer glycyrrhizin low producing strain	2.659
DRR006524	Root Summer glycyrrhizin low producing strain	2.637
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.034
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.063

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.265
SRR2868004	Drought Stress (root)	1.827
SRR2967015	Control (root)	2.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.332
SRR9715740	Leaf	3.042
SRR9715741	Leaf	1.068
SRR9715739	Root	1.344
SRR9715742	Root	1.968
SRR9715743	Root	2.076

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.525
SRR8749028	MeJA induced 9h	6.916
SRR8749029	MeJA induced 9h	9.736
SRR8749030	Uninduced	4.009
SRR8749031	Uninduced	9.690
SRR8749032	Uninduced	4.857

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.600
SRR8400027	Control - Root	2.163