Gene detail

Gene detail information of Glyur000373s00018542.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G44050.1	5.00E-63	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase
NR	XP_004504661.1	1.07E-90	PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_003324477.1	2.00E-50	6,7-dimethyl-8-ribityllumazine synthase [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|O80575\|RISB_ARATH	2.00E-78	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A072UP30\|A0A072UP30_MEDTR	2.00E-89	6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256\|RuleBase:RU003795}

Sequence

Transcript Sequence

>Glyur000373s00018542.1
AGAGCTAGCGGAAGACAAGGAGGATTCTTCACTCGTTAAATAGTTGATGAACTACACCCTTTCCACTTGTCTCTCTCTCTCTCTCTCCTCAGTCCACGCTCCGCCGCACACTTNGTCCTTCCTCGTCGCCGCCCACTCCATTTCCGCCTCTAGGGACGGCACTCTCATCATTAGACCAAAAGAATGGCTCTATTTGTTTCCACCGAATGTTGTTGCACGGTTTAATGAAATTGTCACCAGGCCGCTCTTGGAGGGAGCTTTGGGTACCTTCAAGAATTATTCNGTTCAAGATGAGGACATTGATGTTGTGTGGGTTCCTGGTTGTTTCGAAATTGGTGCTGTTGCAACAAGACTGGGCAAATCAGGCAAATATGACGCAATCGTATGCATAGGAGCTGTGGTACGAGGAGATACAACCCACTATGATGCAGTTGCTAATTCAGCTGCATCTGGAGTGCTTTCAGCTGGTCTAAACTCAGGTGTTCCATGCATATTTGGTGTCCTAACATGTGATAATATGGATCAGGCTATAAATCGAGCTGGTGGCAAATCTGGGAATAAGGGCGCTGAGGCTGCGTTGACTGCTATTGAGATGGCTTCTTTGTTCGTCCACCATCTGAAGTAGTCATATTATTGGGACGGCGTATTAATCCCTATTTTCTCCTCCAGACGTTCTCATATATTCTCAAGCTATTACGGGTTATAATAAGCTCAAGATTAGTACTCTTGCCCCATTATGTGTTTGTATGGGCACGGCTGTGTGTTGTTGAATAAATTTTATGAAAGTGCTGTTGGCGAACAATAGCATTGTAGAATAGCATTTCTTTCTTTCTCTCTCTCTCTCTCTTTTTGTTGAATTTCTATTCACGAATGTACCAGAGAGAGCAAAGTTCATCTCCTCAATTATAGAGTCCTTTTCCTTTTATGAGTTGGACCTAGCAAATTTAGAATTGCACATAATTGTAAGTGAGAGAATGAAGACTTGCTCACTTTTTGCGAAAGTTTTCGTGCACGATCAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00373	137649	143821	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00794	ribH, RIB4	EC:2.5.1.78	Riboflavin metabolism	map00740

Gene Ontology

biological_process
GO:0009231 riboflavin biosynthetic process

cellular_component
GO:0009349 riboflavin synthase complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000373s00018542.1	PF00885.14	DMRL_synthase	55	186	3.50E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.181
SRR1783600	control	44.523
SRR1783602	moderate drought stress	35.798
SRR1811619	moderate drought stress	35.857

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.707
DRR006520	Root Summer glycyrrhizin high producing strain	27.438
DRR006521	Root Winter glycyrrhizin high producing strain	13.856
DRR006522	Root Winter glycyrrhizin high producing strain	13.183
DRR006523	Root Summer glycyrrhizin low producing strain	22.865
DRR006524	Root Summer glycyrrhizin low producing strain	23.305
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.951
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.207

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	143.454
SRR2868004	Drought Stress (root)	93.507
SRR2967015	Control (root)	56.019

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.663
SRR9715740	Leaf	30.329
SRR9715741	Leaf	25.055
SRR9715739	Root	76.661
SRR9715742	Root	41.192
SRR9715743	Root	47.605

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.479
SRR8749028	MeJA induced 9h	29.161
SRR8749029	MeJA induced 9h	73.555
SRR8749030	Uninduced	16.118
SRR8749031	Uninduced	17.470
SRR8749032	Uninduced	27.466

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.420
SRR8400027	Control - Root	52.324