Gene detail

Gene detail information of Glyur000373s00018533.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30950.1	3.00E-136	F-box family protein
NR	XP_007158866.1	0	hypothetical protein PHAVU_002G188300g [Phaseolus vulgaris]
Swissprot	tr\|Q39090\|UFO_ARATH	0	Protein UNUSUAL FLORAL ORGANS
trEMBL	tr\|V7CNP1\|V7CNP1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30860.1}

Sequence

Transcript Sequence

>Glyur000373s00018533.1
ATGGAAGGTTTTCACCCATCCATGAGTATGACCCCTTCTTTTTCNTACACATTTCCTATCAGCGGTAGTACTGGTGTTAGCAGCAGCAACATCACTACAACTACTAACACCACCACTTACAGCACAACTAGTAGTACTACACCATGGATGAACAGCAGGATATGGAGCAAGCTCCCTCAAAGGCTTGTTGACCGTATCATAGCTTTCCTTCCTCCACCCGCTTTCTTCCGTGCACGCTGTGTCTGCAAGAGATGGTATTCCCTTCTCTTCTCCAACTCCTTCCTTGAATTATACCTCCAAGTCTCCCCTCTCCGCCACTGGTTCATCTTCTTCAAACACAACAAGACCCGCAAGAGCACAAGCTACATATACAAAAACAACAACAACAACAATGGTACTACCAGTACTACTACCACCACAACCACTACTACTGGTGGCTGTGAGGGATACCTGTTTGATCCCTATGACATGGCATGGTACCGCATCTCCTTTGCTCTAGTCCCTTCTGGCTTCTCCCCAGCCTCTTCCTCTTCAGGTTTACTCTGTTGGGTCTCAGATGAAGCAGGTCCAAAGACCATGCTTCTCTGCAACCCAATACTCGGTTCTCTGACTCAGTTACCCCCAACTCTGAGACCAAGGCTCTTCCCTTCAATTGGACTCACCATAACCCCAACCTGCATAGATGTCACTGTTGCCGGCGATGACATGATATCCCCTTATGCAGTGAAGAATCTCACATCTGAAAGCTTCCACATTGATGCCGGTGGGTTTTATTCCATGTGGGGTACCACTTCTCCTCTGCCTAGGCTCTGTAGCCTCGAATCTGGTAGGATGGTGTACGCACAGGGGAAATTCTACTGCATGAACTGTAGCCCCTTCAGCGTGCTTGGTTATGACATTTCATCAAACACCTGGTTCAAGATCCAAGCACCCATGAGGAGATTCCTTAGGTCACCCAATTTGGTTGAGTGTAAAGGGAAGCTGTTACTGGTTGCTGCTGTTGAGAAGAGCAAGCTGAATGTTCCGAAGAGTTTGAGGGTATGGAGTTTGCAGGGGTGTGGGACGATGTGGGTGGAATCGGAGAGGATGCCGCAGCAGCTTTATCTTCAGTTTGCGGAATTGGAAGGTGCAGGGTTTGAATGTGTGGGGCATGGGGAGTTCATCGTGATCGTGATTCGTGGGACGGATAAGGCGTTGATGTATGATATGTCGAGGAAGAGGTGGCAGTGGGTTCCACCTTGCCCTTACGCCGCTTCTTATGACCATGATGGGTTTGATGAGTTGCATGGTTTTGCATATGAACCAAGGTTGGCTACCCCTGCTGTTACTGCCCTCCTTGATCAATTGGCCATGCCCATGCCCATGCCCATGCCCTTCCAGGGTTTTAATGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00373	59359	60753	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000373s00018533.1	PF00646.28	F-box	55	93	4.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.131
SRR1783600	control	0.131
SRR1783602	moderate drought stress	0.334
SRR1811619	moderate drought stress	0.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.544
DRR006520	Root Summer glycyrrhizin high producing strain	0.461
DRR006521	Root Winter glycyrrhizin high producing strain	4.477
DRR006522	Root Winter glycyrrhizin high producing strain	4.496
DRR006523	Root Summer glycyrrhizin low producing strain	0.079
DRR006524	Root Summer glycyrrhizin low producing strain	0.079
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.047
SRR9715739	Root	0.000
SRR9715742	Root	0.204
SRR9715743	Root	0.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.102
SRR8749028	MeJA induced 9h	0.450
SRR8749029	MeJA induced 9h	3.585
SRR8749030	Uninduced	0.392
SRR8749031	Uninduced	3.403
SRR8749032	Uninduced	2.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.036
SRR8400027	Control - Root	0.025