Gene detail

Gene detail information of Glyur000373s00018531.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44740.2	0	Y-family DNA polymerase H
NR	XP_004504643.1	0	PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum]
COG	YP_003194519.1	3.00E-37	DNA polymerase IV [Robiginitalea biformata HTCC2501]
Swissprot	tr\|Q8H2D5\|POLH_ARATH	0	DNA polymerase eta
trEMBL	tr\|I1KRK8\|I1KRK8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G09400.1}

Sequence

Transcript Sequence

>Glyur000373s00018531.1
ATAAAACGAGGGATAAAGAAATGCAGGAGAGGAGGAAGCAGAATTGGAGGGAAAGGAAGAGTGGAGAGGGATGCCGGTAGCGAGGCGAGAAACGTGTGACGGAAGAGTCATTGCTCACGTAGACATGGATTGCTTCTACGTTCAAGTGGAACAGAGAAAGCAGCCAAGTTTAAGGGGGTTGCCTACTGCAGTCATACAGTACAACTCGTATAAAGGCGGAGCCTTGATTGCCGTTAGCTATGAAGCTCGCAAGTGTGGAGTCAAACGTTCAATGCGGGGTGAAGAAGCAAAGAAGGCATGCCCCCAAATACAACTAGTTCAAGTCCCCGTGGCACGTGGTAAAGCCAATCTCAACTCATACAGGAATGCAGGCTCTGAGGTTGTTTCGATCCTTTCACGGAAGGGTCGATGTGAGAGGGCTTCAATTGATGAGGTATATCTTGACCTCACTGATGCTGCTCAGACAATGTTAATGGAAACTCCCCCGGAAAGCATGCAAGATTTTGAGGAGGAAGTTCTCAGGTCACATGTTTTGGGGCTTGAAAGCAAGGATGGGGGTGATGTCAAAGAAGAAGTTAGGAAGTGGCTTTGTAGGAGTGANGCTAGTTATCAAGATAAGCTATTAGCTTGTGGGGCCTTCATTGTTGCTGACCTCAGGATGCAGGTTTTGAAAGAGACGGAATTCACATGCTCTGCAGGTATTGCTCATAATAAGATGCTGGCCAAACTTGCTAGTGCTATGAACAAACCTGCACAGCAAACAATTGTTCCACAGTCATCTGTTGAAGGGTTGCTCGAGTCTTTGCCAATAAAGAAAATGAAACAGCTTGGAGGAAAGCTGGGGAGTTCCTTACAAAGTGACCTTGGTGTCAACACTGTTGGTGATTTGCTTCAGTTTTCAGAAGAAAAGCTACAACAACGTTATGGGATCAATACTGGTACTTGGTTGTGGAGTATTGCGAGAGGAATCAGTGGGGAAGAAGTTGAGGGGAGACTACTTCCCAAGAGCCATGGTTCTGGCAAGACATTTCCTGGGCCTCAGGCTTTGAAGACAATCACTGCGGTTCAGCACTGGCTTAATGAACTGTGTGAAGAGCTGAGTGAGCGCCTTCAATCTGACATGGACCAAAACAAACGTATTGCGCACACATTGACTCTGCATGCTAGAGCATATAAGACAGGGGATTCTGATTCGCATAAAAAGTTCCCTTCTAAGTCTTGTCCTTTAAGATATGGGACTAGAAAGATCCAAGAGGATGCCCTAACTCTATTTCAGGCTGGGTTACGTGATTTTTTGGGCTTTCAAAACTGTAAAACTCATGGCAATGAAAATAACAACTGGGGAATAACAGCACTTTCTGTTTCCGCGAGTAAGATTGTCCCCATACCATCTGGGACACATTCAATTGATAAATACTTCAGTGGGCGATTTCCATCTGGTTCTTCNTCAAATCAATCACTAGATATTGTCATTGATGAAGTTGCACCACCATCACCTTCAGGTAGTGAAAACTGTTCGGGTGTGATTCCCGTTGAATTTCAGTTTGACTATCCTGAAGAAGACACAGGAATGAAGCATTCAAAGGCTTGTCTAGATCAACAGGATCCATTGTGCAATTTATCCGGGCAAGTAGATGGCTGGACTGAAGAATCCTCCCTGGTGTCACCCCCAGAAAGTGAAAGCAGAATGGCACAGAGTGAGTCACGTAGAGATTTACCTGCAAAAGAACCTAGGCTTGTTTCCAATACATCCAGTTTGAAAGTGTTTGGGAAGAAAAAGGCAGCAGGAAAGAAGCCTCAAGGGAATTGTTCAATTATAAAATTCTTCGATAACTACCACAGTTCCCAGTCTTCATTTGAGCAGAAGAATGTTACAAGTGCCCAAGGTGTTAAAATGCCATCATTGTTTGGATCTCAATCTGCCAGTGATAGTCATTTAACATGTAATCAAGTTGAGATGCCAGCTGAGAATCATCATCACGAAGAGATTGATAGAAACAACAGTGGATGTAGCATAGCTAATATGCCACAAGGAAGGCAAACTTGGAGTTATAACATTGATGAGATAGATCCCTCTATCATTGATGAATTACCACCAGAAATTCAGGAAGAGTTTCGAACCTGGCTTAGGCCTCTTAAGCGGCCTAATGTGGTTAAACGAGGTTCTAGTATTACTCACTATTTCTTACCGGACAAAAATTGTAGCAGCAGCAAAGGCATGATGGATAACAATGCAGCGTTGCAAAGTTTCCTTCAGGTTCTCCCCCCTGTTGAATTCGCTTGCGTCTATGGATCATCTCTTCACCCAACCAACCACGACAACAAGACAACCATGATAGATTATATTCTTGGCGTGTCTGACCCCAAGCAGTGGCATTCTGAGAATCTGAAATTGAACAAGCATCACTATGCGTCATGGATGGTGCACCTTGGTGGGGAGAGGCTGATTACCGGGGTTGCAGATAATATTGGTGTGGGAGTACATTTCAACCCTTTTGTTACTTGGAACGGAAAGATGTTCAAATATGGGGTTGTTCGAATGCATGACTTACTCCAAGATGTACAGTATTGGGAGAAATTCTACTTGTGNGGTCGTTTACAAAAACCAGTTCACATTGTTGTTGATAATTTGGACATTAACAGCACCAATTCTGTTAATTTGCAAGCTGCATTGTCAGCTGCTCTTCTCCTGCTTCCATCAGAATTCACAGAGGCAGATCTGTATGCCAAAGTTTGTAGTCTCTCATATATGGGTGATGTGCGCATGTTATTTGCCGAGGATAAAAACAAGGTGAAGAAGATTGTAACCGGGCAGTTTGATCTATTCCACTCGATGTATAAGCCACTTCTTGAAGAATATGAGGCTAAGAAGTTGTTGAAACTTTCATCAACTGTCAATCACCAAATACAAATCTCTCAGGATTGTGACCTATCAGTTGCTTGCTCTCTAGTTTCTGCTCTTCCTCCGTCAATCAGAAGTCAGATGAGCATGAAGCAACAAGAGAAAATGAAATTAAGTCAAACTGGTAGAATCATACATGATACTAAAATCAGTTCAAGAGATGGGGCTGCGAATTGCTTGCAGAGAATTCTGAGGCAAAGGGTTATGGTTTCAAGTGNAAGGCAGGCAGTATCTGGCCTACTGGCTGTTGGTGGGGTAAATGCTACGAGGTATCTTGCTAACAAAGGATTAGAAACTGCAATATTCTCCAACATGTCCACCTGCAACATGGTGAAGTTCCAACTGAAGTTCATCCAGAACCTTGGAGACAAACAGCAGGCAGTTAATCTTCTTCCTCTGAAAGAGTTTGATTGTAACATCATCATCGATAATCCGGACATCAACCTCACTCTCTTTGGATTTCCTCTGCAGCCATGA

Protein Sequence

>Glyur000373s00018531.1
MPVARRETCDGRVIAHVDMDCFYVQVEQRKQPSLRGLPTAVIQYNSYKGGALIAVSYEARKCGVKRSMRGEEAKKACPQIQLVQVPVARGKANLNSYRNAGSEVVSILSRKGRCERASIDEVYLDLTDAAQTMLMETPPESMQDFEEEVLRSHVLGLESKDGGDVKEEVRKWLCRSXASYQDKLLACGAFIVADLRMQVLKETEFTCSAGIAHNKMLAKLASAMNKPAQQTIVPQSSVEGLLESLPIKKMKQLGGKLGSSLQSDLGVNTVGDLLQFSEEKLQQRYGINTGTWLWSIARGISGEEVEGRLLPKSHGSGKTFPGPQALKTITAVQHWLNELCEELSERLQSDMDQNKRIAHTLTLHARAYKTGDSDSHKKFPSKSCPLRYGTRKIQEDALTLFQAGLRDFLGFQNCKTHGNENNNWGITALSVSASKIVPIPSGTHSIDKYFSGRFPSGSSSNQSLDIVIDEVAPPSPSGSENCSGVIPVEFQFDYPEEDTGMKHSKACLDQQDPLCNLSGQVDGWTEESSLVSPPESESRMAQSESRRDLPAKEPRLVSNTSSLKVFGKKKAAGKKPQGNCSIIKFFDNYHSSQSSFEQKNVTSAQGVKMPSLFGSQSASDSHLTCNQVEMPAENHHHEEIDRNNSGCSIANMPQGRQTWSYNIDEIDPSIIDELPPEIQEEFRTWLRPLKRPNVVKRGSSITHYFLPDKNCSSSKGMMDNNAALQSFLQVLPPVEFACVYGSSLHPTNHDNKTTMIDYILGVSDPKQWHSENLKLNKHHYASWMVHLGGERLITGVADNIGVGVHFNPFVTWNGKMFKYGVVRMHDLLQDVQYWEKFYLXGRLQKPVHIVVDNLDINSTNSVNLQAALSAALLLLPSEFTEADLYAKVCSLSYMGDVRMLFAEDKNKVKKIVTGQFDLFHSMYKPLLEEYEAKKLLKLSSTVNHQIQISQDCDLSVACSLVSALPPSIRSQMSMKQQEKMKLSQTGRIIHDTKISSRDGAANCLQRILRQRVMVSSXRQAVSGLLAVGGVNATRYLANKGLETAIFSNMSTCNMVKFQLKFIQNLGDKQQAVNLLPLKEFDCNIIIDNPDINLTLFGFPLQP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00373	36255	48782	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03509	POLH	EC:2.7.7.7	Fanconi anemia pathway	map03460
			Platinum drug resistance	map01524

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0003684 damaged DNA binding

GO:0003887 DNA-directed DNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000373s00018531.1	PF00817.15	IMS	17	223	1.70E-46
Glyur000373s00018531.1	PF11799.3	IMS_C	303	441	6.10E-16
Glyur000373s00018531.1	PF09139.6	Mmp37	724	1039	8.00E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.369
SRR1783600	control	3.330
SRR1783602	moderate drought stress	4.375
SRR1811619	moderate drought stress	4.364

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.230
DRR006520	Root Summer glycyrrhizin high producing strain	5.132
DRR006521	Root Winter glycyrrhizin high producing strain	3.789
DRR006522	Root Winter glycyrrhizin high producing strain	3.833
DRR006523	Root Summer glycyrrhizin low producing strain	3.931
DRR006524	Root Summer glycyrrhizin low producing strain	3.918
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.458
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.269

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.236
SRR2868004	Drought Stress (root)	7.892
SRR2967015	Control (root)	8.535

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.634
SRR9715740	Leaf	5.965
SRR9715741	Leaf	5.515
SRR9715739	Root	1.120
SRR9715742	Root	2.642
SRR9715743	Root	2.808

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.816
SRR8749028	MeJA induced 9h	4.351
SRR8749029	MeJA induced 9h	3.741
SRR8749030	Uninduced	3.975
SRR8749031	Uninduced	4.130
SRR8749032	Uninduced	2.745

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.573
SRR8400027	Control - Root	7.767