Gene detail

Gene detail information of Glyur000373s00018530.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06170.2	6.00E-54	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	XP_007163873.1	0	hypothetical protein PHAVU_L009100g [Phaseolus vulgaris]
Swissprot	tr\|Q8GX46\|BH091_ARATH	2.00E-84	Transcription factor bHLH91
trEMBL	tr\|V7D2D8\|V7D2D8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35868.1}

Sequence

Transcript Sequence

>Glyur000373s00018530.1
ATGTCTTCTTCTGGTGACAAAAGACCAATGAGTTCAGGAGACAGGCCAAAAATGCATGACCAAACTGGTTGCTTTGATTCCAACACANTGACAGAAGGTATAAGCTCTCTAAAAGATAGCTTTCCTCAAACTCTGCCAAACCCACCATCGCTTATGATTGCAGGCAACACCACAAACAGCAACAACAGCCTTGAAGAGAATTTCAGGCCTTCTGTGGAGGAGCTCTCTTATCACCATCACAATAATCCACAGCACCCAGAGGATGTCTCCACCTATGCAAATGGGGTCACTGCCACATCTATAGACATCTCACAGCCACAGCATCTGGGTTTGAACATGGGGAACCCCTACAACAACAACAACATGGATACCCATTTGGTGCAAGCAGTCAATGATGCCTTTCCCTATCAGCTGTCAACTTGGGACCCTAGTGTTCAGGAATTACAAGACATGAGCTATGCCAATCATCCAGAACACCACCAACCACATGAACAACAATTTCAACAAATTGAGGCACAAAACTGCAGCCAAAGCTATGGTTCCTCTTCCATATTGGACCCTCCCTACTCTTCACCAGATCTCCTAAACCTCCTCCACTTACCCAGATGCTCAGCTTCATCTTTGCTCACCAATCCATCTACCATCTGCATCACGAACCCGACTCAGAAGGCACCCAATTTCCAGAACTCAATGAGTTTTCTTGGAGACCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTTTTGTATGATCCTTTATTTCATTTGAACCTGCCTCCACATCCTCCAGCCCTTAGAGAATTGTTTCAGTCTCTCCCCCGTGGCTACAGCTTGCCGACCAGCTCCAGGAATGTCTCTATTTTTGGTGGAGGGGATGAGATAGAGGGAGATGGGAGTCAGCTTGACATGGGAGTGCTGGAATTCAATAGGGTCACAGCTTCTGTTGGCAAAGGAAAGGAAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAATACAGGATCTTGAGGGATCTTATCCCAAGCCCCACCAAGAATGATAGAGCGTCTGTGGTGGGCGATGCCATTAACTATATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAATTGTTGGTGGAGAAGAAAAGATATGGGAGGGAGAGATGCAAGAGGCTGAAAACTGAAGATGATGCCGCAGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGTGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGAGAGTGAGGTTGATGTCCGGATTATCGATGATGATGTTACAATCAAACTCTTTCAGAGGAAGAAGATTAACTGCCTGCTGTTTGTCTCCAAGGTTCTGGATGAACTTCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGAGAATATTGCAGTTTCTTGTTCAACAGCAAGATAATTGAAGGTTCATCAGTCTATGCAAGTGCCATAGCGAACAGGGTGATTGATGTTCTGGACACCCAGTACGCAGCAGCAGTTCCACATACAAATAGCTATTAGAGCTGGGGAGGCTGGTGTCAATATCAGGCACCAAATGTCTCTTTTAGTTGATACTGACATACATGTACGAAACAACATCATGATAATAATAGTATTAATAAGTTCATGGGGACACCTAGGAGATGCTGAAATTTACAAGTTCAACTGTTTCTGACTTTCTGGTTCATAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00373	34762	36821	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH
EAR motif-containing Proteins	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000373s00018530.1	PF00010.21	HLH	325	371	2.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.527
SRR1783600	control	8.718
SRR1783602	moderate drought stress	12.835
SRR1811619	moderate drought stress	12.680

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.010
DRR006520	Root Summer glycyrrhizin high producing strain	9.088
DRR006521	Root Winter glycyrrhizin high producing strain	1.984
DRR006522	Root Winter glycyrrhizin high producing strain	1.804
DRR006523	Root Summer glycyrrhizin low producing strain	15.371
DRR006524	Root Summer glycyrrhizin low producing strain	15.681
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.328
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.280

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.813
SRR2868004	Drought Stress (root)	1.464
SRR2967015	Control (root)	2.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.333
SRR9715740	Leaf	12.250
SRR9715741	Leaf	13.143
SRR9715739	Root	0.754
SRR9715742	Root	7.370
SRR9715743	Root	5.849

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.092
SRR8749028	MeJA induced 9h	0.077
SRR8749029	MeJA induced 9h	0.070
SRR8749030	Uninduced	0.069
SRR8749031	Uninduced	0.044
SRR8749032	Uninduced	0.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.502
SRR8400027	Control - Root	6.248