Gene detail information of Glyur000372s00017121.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04670.1 | 3.00E-117 | Enhancer of polycomb-like transcription factor protein |
| NR | XP_007145542.1 | 0 | hypothetical protein PHAVU_007G247300g [Phaseolus vulgaris] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-14 | Uncharacterized protein At1g04910 |
| trEMBL | tr|V7BLR9|V7BLR9_PHAVU | 0 | Enhancer of polycomb-like protein {ECO:0000256|RuleBase:RU361124} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00372 | 132231 | 137955 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000372s00017121.3 | PF10250.4 | O-FucT | 35 | 77 | 2.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.549 |
| SRR1783600 | control | 15.352 |
| SRR1783602 | moderate drought stress | 15.911 |
| SRR1811619 | moderate drought stress | 15.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.201 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.522 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.714 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.434 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.990 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.050 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.338 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.872 |
| SRR2868004 | Drought Stress (root) | 26.863 |
| SRR2967015 | Control (root) | 27.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.477 |
| SRR9715740 | Leaf | 21.270 |
| SRR9715741 | Leaf | 15.369 |
| SRR9715739 | Root | 3.373 |
| SRR9715742 | Root | 19.636 |
| SRR9715743 | Root | 14.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.523 |
| SRR8749028 | MeJA induced 9h | 26.496 |
| SRR8749029 | MeJA induced 9h | 22.690 |
| SRR8749030 | Uninduced | 9.329 |
| SRR8749031 | Uninduced | 8.304 |
| SRR8749032 | Uninduced | 11.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.731 |
| SRR8400027 | Control - Root | 24.861 |