Gene detail information of Glyur000372s00017116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56240.1 | 3.00E-28 | copper chaperone |
| NR | ACJ84810.1 | 2.51E-51 | unknown [Medicago truncatula] |
| COG | YP_003401715.1 | 1.00E-05 | heavy metal transport/detoxification protein [Haloterrigena turkmenica DSM 5511] |
| Swissprot | tr|O82089|CCH_ARATH | 6.00E-35 | Copper transport protein CCH |
| trEMBL | tr|B7FJ81|B7FJ81_MEDTR | 9.00E-52 | Uncharacterized protein {ECO:0000313|EMBL:AFK47931.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00372 | 96932 | 100052 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000372s00017116.1 | PF00403.21 | HMA | 7 | 64 | 1.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.764 |
| SRR1783600 | control | 13.925 |
| SRR1783602 | moderate drought stress | 11.196 |
| SRR1811619 | moderate drought stress | 10.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 89.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 89.329 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.772 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.659 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 90.562 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 90.514 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 226.588 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 226.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 408.192 |
| SRR2868004 | Drought Stress (root) | 474.223 |
| SRR2967015 | Control (root) | 315.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 188.885 |
| SRR9715740 | Leaf | 190.449 |
| SRR9715741 | Leaf | 266.718 |
| SRR9715739 | Root | 17.959 |
| SRR9715742 | Root | 84.226 |
| SRR9715743 | Root | 77.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.929 |
| SRR8749028 | MeJA induced 9h | 0.638 |
| SRR8749029 | MeJA induced 9h | 0.579 |
| SRR8749030 | Uninduced | 0.681 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 157.143 |
| SRR8400027 | Control - Root | 146.296 |