Gene detail information of Glyur000372s00017114 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27600.1 | 0 | AAA-type ATPase family protein |
| NR | XP_008458580.1 | 0 | PREDICTED: vacuolar protein sorting-associated protein 4 [Cucumis melo] |
| COG | NP_070126.1 | 5.00E-63 | cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304] |
| Swissprot | tr|Q9ZNT0|VPS4_ARATH | 0 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 {ECO:0000303|PubMed:17468262} |
| trEMBL | tr|A0A0A0KGS6|A0A0A0KGS6_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN46961.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00372 | 85259 | 89671 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000372s00017114.1 | PF04212.13 | MIT | 8 | 73 | 4.30E-19 |
| Glyur000372s00017114.1 | PF00004.24 | AAA | 171 | 300 | 4.60E-43 |
| Glyur000372s00017114.1 | PF09336.5 | Vps4_C | 369 | 434 | 1.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.142 |
| SRR1783600 | control | 14.405 |
| SRR1783602 | moderate drought stress | 9.683 |
| SRR1811619 | moderate drought stress | 9.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.242 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 38.934 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.468 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 37.820 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.657 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.950 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.978 |
| SRR2868004 | Drought Stress (root) | 21.971 |
| SRR2967015 | Control (root) | 18.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.840 |
| SRR9715740 | Leaf | 17.683 |
| SRR9715741 | Leaf | 11.556 |
| SRR9715739 | Root | 6.630 |
| SRR9715742 | Root | 6.900 |
| SRR9715743 | Root | 7.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.178 |
| SRR8749028 | MeJA induced 9h | 13.257 |
| SRR8749029 | MeJA induced 9h | 9.799 |
| SRR8749030 | Uninduced | 8.725 |
| SRR8749031 | Uninduced | 7.487 |
| SRR8749032 | Uninduced | 6.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.950 |
| SRR8400027 | Control - Root | 14.236 |