Gene detail information of Glyur000372s00017111 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36300.1 | 4.00E-73 | Integral membrane Yip1 family protein |
| NR | XP_002265566.1 | 2.47E-115 | PREDICTED: protein YIPF5 homolog [Vitis vinifera] |
| trEMBL | tr|F6HVQ5|F6HVQ5_VITVI | 9.00E-116 | Protein YIPF {ECO:0000256|RuleBase:RU361264} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00372 | 78679 | 79416 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000372s00017111.1 | PF04893.12 | Yip1 | 84 | 232 | 8.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.004 |
| SRR1783600 | control | 3.050 |
| SRR1783602 | moderate drought stress | 2.354 |
| SRR1811619 | moderate drought stress | 2.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.005 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.141 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.932 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.763 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.882 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.504 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.810 |
| SRR2868004 | Drought Stress (root) | 5.428 |
| SRR2967015 | Control (root) | 3.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.080 |
| SRR9715740 | Leaf | 0.063 |
| SRR9715741 | Leaf | 0.471 |
| SRR9715739 | Root | 2.476 |
| SRR9715742 | Root | 2.059 |
| SRR9715743 | Root | 1.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.214 |
| SRR8749028 | MeJA induced 9h | 19.428 |
| SRR8749029 | MeJA induced 9h | 43.020 |
| SRR8749030 | Uninduced | 3.678 |
| SRR8749031 | Uninduced | 16.693 |
| SRR8749032 | Uninduced | 25.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.007 |
| SRR8400027 | Control - Root | 3.811 |