Gene detail information of Glyur000372s00017108 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56160.1 | 4.00E-106 | Sodium Bile acid symporter family |
| NR | XP_004514722.1 | 0 | PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cicer arietinum] |
| COG | YP_006761080.1 | 5.00E-15 | bile acid:sodium symporter family protein [Desulfobacula toluolica Tol2] |
| Swissprot | tr|F4IZC4|BASS4_ARATH | 1.00E-138 | Probable sodium/metabolite cotransporter BASS4, chloroplastic (Precursor) |
| trEMBL | tr|A0A072VIJ8|A0A072VIJ8_MEDTR | 0 | Na+-bile acid cotransporter {ECO:0000313|EMBL:KEH41406.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00372 | 67017 | 75314 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000372s00017108.1 | PF13593.1 | DUF4137 | 90 | 431 | 6.20E-58 |
| Glyur000372s00017108.2 | PF13593.1 | DUF4137 | 90 | 425 | 2.20E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.293 |
| SRR1783600 | control | 10.223 |
| SRR1783602 | moderate drought stress | 19.304 |
| SRR1811619 | moderate drought stress | 18.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.396 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.544 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.999 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.616 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.537 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.994 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.419 |
| SRR2868004 | Drought Stress (root) | 17.706 |
| SRR2967015 | Control (root) | 14.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.942 |
| SRR9715740 | Leaf | 16.946 |
| SRR9715741 | Leaf | 16.729 |
| SRR9715739 | Root | 3.284 |
| SRR9715742 | Root | 8.670 |
| SRR9715743 | Root | 5.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.573 |
| SRR8749028 | MeJA induced 9h | 5.826 |
| SRR8749029 | MeJA induced 9h | 4.213 |
| SRR8749030 | Uninduced | 4.365 |
| SRR8749031 | Uninduced | 1.879 |
| SRR8749032 | Uninduced | 2.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.031 |
| SRR8400027 | Control - Root | 20.546 |