Gene detail

Gene detail information of Glyur000372s00017105

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54260.1	3.00E-140	TRICHOME BIREFRINGENCE-LIKE 36
NR	KEH41400.1	0	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein [Medicago truncatula]
Swissprot	tr\|Q940H3\|TBL36_ARATH	2.00E-175	Protein trichome birefringence-like 36
trEMBL	tr\|A0A072VTJ0\|A0A072VTJ0_MEDTR	0	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein {ECO:0000313\|EMBL:KEH41400.1}

Sequence

Transcript Sequence

>Glyur000372s00017105.1
GCCTTAATGAAACACTTTACTTCAACACAATCAAGACCCTTCCAATCTACAAAAACCCTTCAAAGTTCACATTCTATGCTCTCTCACACCTTGGTCTTCTTCTTCTTCTTCCATGGCAACACCACCAAAGAGTACTACTCATTTGCTTTCCTGTTTCTTGTTGTGCAGCATAATCTTCCTAAGCTTCTTATTCCACTGCACATTATCTCTTCTGGACCCTGAAGATGAGGTTGGCTTTCTGGTTGAAGCTGATGATTTCAACATGGTCCAAGGCAACAGAGATTCTAGGAGGAAGAGATCATGTGATTTCTCTGTTGGAAAATGGGTTTATGATGAGTCTTACCCTCTCTATGATCCTAACTGCCCCTATCTAAGCACTGCAGTTACTTGTCAGAAGAATGGGAGGCCAGATTCAGATTATGAGAAGTGGAAGTGGAAGCCAAATGGTTGTTCCATCCCAAGGTTTGATGCACTGAGGTTTCTTGGAAAAATGAGAAGAAAGAGAATAATGCTGGTGGGTGATTCAATAATGAGAAACCAGTGGGAATCTCTNGTTTGCTTAGTGCAAGGGGTAATTCCAACTGGTAGAAAAAGGGTGACCTATAATGGACCTGCAATGGCCTTCCATGCTATGGATTTTGAGACATCAATTGAGTTTTTCTGGGCACCACTGTTGGTAGAACTGAAGAAAGGTCCAGAAAACAAGAGGATTCTACATTTGGATTTGATTGAAGAAAATGCAAGGTCTTGGAAAGGAGTTGATGTACTTGTATTTGATTCAGCCCATTGGTGGACTCACTCTGACAAAACAAGCTCGTGGGATTATTACATGGAGGGAAATAATCTCATCAGAAACATGAATCCTATGGTTGCTTATCAGAAAGGACTCAGCACATGGGCAAGGTGGGTGGATTTAAATCTAGACCCTCAAAGAACCAAAGTCATTTTCAGAAGCATGTCGCCTAGGCATAACAGGGAAAATGGCTGGAAATGCTACAATCAGAAGCAGCCCCTACCATTTTTCAGCCACCAACATGTTCCTGAACCTTTGGTAGTGCTACAAGGAGTGCTGAAGAGAATGAGGTTTCCGGTATATCTGCAAGACATTACAACAATGACCGCCTTCCGCAGAGACGGGCATCCTTCGGTGTATCGGAGGGCAATAAGCCAAGATGAGAGACAAAAACAAGGAACAACAGGCCATACCTCTGATTGCAGCCATTGGTGCCTCCCTGGGGTGCCTGATATTTGGAATGAGATGTTGAGTGCATTGCTTTGACAACAGCTGCTCTAGATCAGGACTTATATTTTCATGGTCACTACTCCTGCAAGTACAATGTTGTTTGGTGTATTTATATTTAATGTTATCAGATGGATAGCACTACACTTGGATTTTTCATTATGATCTTCACGAGAAAATATCCTCTTCATATCTTCCATTACTATGCTTTCAAAAAAATAAATGAAATGGAGATGATACATNGGTAGTAGAGAGTATCATTTATTAGTTATTACCCCAAAAACATAGTAATAAAGAAAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00372	57495	60444	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000372s00017105.1	PF14416.1	PMR5N	62	114	4.50E-21
Glyur000372s00017105.1	PF13839.1	PC-Esterase	115	387	1.20E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.923
SRR1783600	control	22.010
SRR1783602	moderate drought stress	12.425
SRR1811619	moderate drought stress	12.595

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	85.015
DRR006520	Root Summer glycyrrhizin high producing strain	84.907
DRR006521	Root Winter glycyrrhizin high producing strain	0.144
DRR006522	Root Winter glycyrrhizin high producing strain	0.180
DRR006523	Root Summer glycyrrhizin low producing strain	28.171
DRR006524	Root Summer glycyrrhizin low producing strain	28.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.646
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.695

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	80.282
SRR2868004	Drought Stress (root)	48.866
SRR2967015	Control (root)	52.304

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.593
SRR9715740	Leaf	0.115
SRR9715741	Leaf	1.415
SRR9715739	Root	23.997
SRR9715742	Root	12.121
SRR9715743	Root	12.712

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.293
SRR8749028	MeJA induced 9h	0.243
SRR8749029	MeJA induced 9h	0.251
SRR8749030	Uninduced	0.098
SRR8749031	Uninduced	0.327
SRR8749032	Uninduced	0.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	103.198
SRR8400027	Control - Root	132.057