Gene detail

Gene detail information of Glyur000372s00017103

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56940.1	1.00E-35	Ribosomal protein S16 family protein
NR	XP_002460467.1	1.30E-44	hypothetical protein SORBIDRAFT_02g028880 [Sorghum bicolor]
COG	YP_006372670.1	3.00E-23	30S ribosomal protein S16 [Tistrella mobilis KA081020-065]
Swissprot	tr\|Q4G391\|RR16_EMIHU	5.00E-16	30S ribosomal protein S16, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_00385}
trEMBL	tr\|C5X4K2\|C5X4K2_SORBI	5.00E-45	Putative uncharacterized protein Sb02g028880 {ECO:0000313\|EMBL:EER96988.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00372	47607	50132	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000372s00017103.1	PF00886.14	Ribosomal_S16	9	70	6.40E-25

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	7.978
SRR1783600	control	7.940
SRR1783602	moderate drought stress	6.851
SRR1811619	moderate drought stress	6.744

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.730
DRR006520	Root Summer glycyrrhizin high producing strain	22.720
DRR006521	Root Winter glycyrrhizin high producing strain	18.307
DRR006522	Root Winter glycyrrhizin high producing strain	17.933
DRR006523	Root Summer glycyrrhizin low producing strain	21.848
DRR006524	Root Summer glycyrrhizin low producing strain	21.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	169.478
DRR006526	Leaf Summer glycyrrhizin high producing strain	167.190

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.835
SRR2868004	Drought Stress (root)	36.919
SRR2967015	Control (root)	30.071

SRA Experiment	Description	TPM
SRR9715738	Leaf	143.390
SRR9715740	Leaf	237.415
SRR9715741	Leaf	114.483
SRR9715739	Root	27.368
SRR9715742	Root	14.926
SRR9715743	Root	16.949

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.217
SRR8749028	MeJA induced 9h	26.877
SRR8749029	MeJA induced 9h	40.440
SRR8749030	Uninduced	40.342
SRR8749031	Uninduced	21.651
SRR8749032	Uninduced	42.322

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	40.749
SRR8400027	Control - Root	41.616