Gene detail

Gene detail information of Glyur000371s00032987

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G02870.3	2.00E-153	Galactose oxidase/kelch repeat superfamily protein
NR	KHN06840.1	0	F-box/kelch-repeat protein SKIP11 [Glycine soja]
COG	YP_003393273.1	1.00E-10	Kelch repeat-containing protein [Conexibacter woesei DSM 14684]
Swissprot	tr\|Q8L736\|SKI11_ARATH	0	F-box/kelch-repeat protein SKIP11
trEMBL	tr\|I1KXS1\|I1KXS1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G41020.1}

Sequence

Transcript Sequence

>Glyur000371s00032987.1
ATGTTGGACGGTCGTTCCTGTGTGGTTCCGAGGCTGTTTTCAGGTTCTTGCCAAGCGGAGAACAACTGGTCCTTCATGAAATACCTGCCGGATTTGGACATCAAAAGCAGCAAGCGCGCTTTAGACGTCGATGGTGAAGATGAAACCCAGCCAAGGAAGGTTAACAGGAGATTGGATCGAATTTCGATTCAACCACAATCTTGTCATGCTGAAGATTCTGTTGTTCCTCAATTGGATGAGGATGATCAGGGGAAGGATTGTGAGCCACCATTGAGTAATTGCCAAAGAGTTGAAAAGGATGGAGCTTTTTCTGTCCAGTTATCGGCTGAACAAGCACAGCATCGTCCTGGGGATTCATCAATGAAGTCCGGTGGTGATCATCAGTCGAATAAACAACAGCAGGATAAGTCTGGGGATTCATCAGATTCTGTTGTTCATCAATCTGATGAGCAGCAATTTGAAGGGGTTTTGTTGAATTCCAATGACCAGCCAGCAGATGAGCAGCAAGGACAACAAGCTGGGGATTCATCAGATTCCGGTTCGCTCTTGCCGCGGATGAACCGGGACAGCTCGATTGCCTGTCTCAGCCGCTGTTCGAGGTCTGATTATGGTTCCCTTGCCTCGCTGAATAGGAGCTTCCGCAACATAATCAGGAGTGGTGAGCTGTACACATGGAGGAGACTCAATGGGATCATAGAGCACTGGATTTATTTCTCCTGTGCCCTCCTCGAATGGGAGGCCTATGATCCGATTCGCGAACGGTGGATGCATTTGCCTAGAATGGCTTCTAATGAATGCTTCATGTGTTCGGATAAGGAGTCTTTAGCTGTAGGTACCGAACTTCTTGTGTTTGGGAGGGAGCTTCGTTCCCATGTCATTTACAGATACAGTCTTTTGACAAACTCATGGTCATCTGGGATGAGGATGAATGCTCCGAGATGCTTGTTCGGGTCTGCAAGCCTTGGAGAGATTGCAATTTTAGCCGGTGGTTGCGATTCAGATGGACATATACTTGACTCTGCTGAACTGTATAACTCTGAAAACCAAACATGGGAACCACTCCCAAGCATGAACAAGCCCAGGAAGATGTGCTCTGGGGTATTCATGGATGGGAAGTTTTATGTCATCGGGGGAATCGGCGGGCGCGAATCGAAGCTTCTTACATGTGGTGAGGAGTACAACTTACAGACCAGAACATGGACAGAGATTCCTAACATGTCCCCCGGGCGAAGTACTAGGGGATCTGAGATGCCTGCTACGGCCGAGGCACCACCTCTGGTTGCTGTTGTAAATAATGAGTTATATGCTGCTGATTATGCTGACAAGGAGGTTAAGAAATATGACAAGGACAGGAAGTTGTGGGTTACCATTGGGAGACTGCCGGAGCGAGCGGTGTCGATGAATGGTTGGGGCCTTGCATTCAGGGCATGTGGGAACAGGCTTATTGTCATTGGTGGACCTAGGACTCATGGTGAGGGTTTCATTGAACTCAATTCATGGGTGCCCAGTGAAGGACCTCCACAATGGAATCTACTGGCCAGGAAACAATCTGGTAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00371	81769	83358	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000371s00032987.1	PF01344.20	Kelch_1	312	358	3.30E-11
Glyur000371s00032987.1	PF01344.20	Kelch_1	360	407	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.003
SRR1783600	control	4.296
SRR1783602	moderate drought stress	4.075
SRR1811619	moderate drought stress	3.950

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.678
DRR006520	Root Summer glycyrrhizin high producing strain	15.892
DRR006521	Root Winter glycyrrhizin high producing strain	8.696
DRR006522	Root Winter glycyrrhizin high producing strain	8.566
DRR006523	Root Summer glycyrrhizin low producing strain	27.178
DRR006524	Root Summer glycyrrhizin low producing strain	26.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.966
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.929

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.691
SRR2868004	Drought Stress (root)	24.700
SRR2967015	Control (root)	28.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.637
SRR9715740	Leaf	24.022
SRR9715741	Leaf	22.943
SRR9715739	Root	14.348
SRR9715742	Root	29.970
SRR9715743	Root	25.888

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.176
SRR8749028	MeJA induced 9h	101.177
SRR8749029	MeJA induced 9h	53.377
SRR8749030	Uninduced	165.255
SRR8749031	Uninduced	137.983
SRR8749032	Uninduced	75.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.940
SRR8400027	Control - Root	12.957