Gene detail

Gene detail information of Glyur000371s00032980

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19420.1	0	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
NR	XP_004511218.1	0	PREDICTED: uncharacterized protein LOC101514207 isoform X1 [Cicer arietinum]
COG	YP_001539154.1	4.00E-35	regulator of chromosome condensation, RCC1 [Salinispora arenicola CNS-205]
Swissprot	tr\|Q9FN03\|UVR8_ARATH	1.00E-52	Ultraviolet-B receptor UVR8
trEMBL	tr\|K7L9S7\|K7L9S7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G41046.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000371s00032980.1
CCAAACCTCCAGCCCCAGGTTCCGAAGCAGAGAGGGACACCAGCGAGGCATGTCGTTTCAAATCCCGAAATTGGACTCATTTGTCCCCCCAAAGTGGCAGAAAACGACAAAACCAGCCATCCCCATCTCACAGATTTCAGTTGCTTACGTGGCATTAACCGGCAGAAAAAACAGTTAGCTCCTCTCAGAAAGAGAGAGAGGGAGACAGAGAGAGAGCCTCTCGCGTGTTAACAACATTCTCCAAAGCTCTGCGAATTCGAGCTGAGAGAGAAAAAAATACCAAAAAAAAAAAAATCAAAAAGAAAAAACCGAAGGCATTGTCTCTCTCAACAACAGCAATCTCCCAAATCGCAACCTCTTAGTTCTTCGAATTCCCTTTCGCCGCGGTTTCAACGACCCTCAGTTCATCGAAAATGGTTCGGCTTTTCACGGTTTCTGAGGATTCCTTGCAATGCCGCTGGTTCTGATTCCCACGGCGTCGTTTCGTCCAACATTTGTGACGCAGAAGGAGCTTCGCTAGAGANAATCCGAGGAATTCGAAGATTTCGGTGGGGATTCGAGGTTCACGCGCGTTTCTAGGGTTTTCCTTTGAGCTGAATGTGTTTCCCTTAGACAATTTTCTCTTCGGTTTTATGAAGCCGGAGGTGTTGTTGAGCTGTGAGGTCTCTCTCTTAGCNATGGGGTAGATAGAAACAGCTCCTCTTTTTTTCTCTTTAATTTTATTATTATCAATTTTTGCGAGTGCTGCATTGGTGTTTTTGTTTTCATGGGGAGGGGTTGGACGTTGCTTTATGGTATCTGCTTAGTTTTGAGTTGTTGTTGTTGTTCAAATGGGTATTGTGTCCATTCATGGGAAGCACCTCTTATTGCAACTTGAATGGCTGATCCTCAGAAAACTGGTCTTGGCGACAGCAGGGATATCGAGCAGGCAATTACATCTCTTAAGAAAGGCTCATATCTGCTGAAGTACGGACGAAGAGGGAAGCCGAAGTTCTGCCCGTTTAGGCTTTCCAATGATGAGTCTCTACTCCTATGGTACTCTGGCAAGGAAGAGAAACAGCTGAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGGCCTGAAAAGGAGTATCAATCATTTTCTCTTATATACAACGATAGGTCCTTGGATTTGATTTGCAAGGACAAAGATGAAGCTGAAATCTGGTTTGTCGGTCTTAAGGCATTAGTTACACGAGGTAACTTTTGCAAGTGGAGATTTGAACCAAGATCTGAAAGTCAGTATTCTGACAGTCCNAAGTCTGGAACAAGAAGATCCACTCCATCAGTTGCACCATTTGTCTGTGACAATGGCTTTCATCTACTTTTGTTTCATACAGACCCCGGAGATACCGATGGAGTTGCTTTCGAAAATTCTTCGCAAAATAAATGGGTAAAGGCTTTCTCTGAAATAATTACATACACTGCAGCTAGCAAGAGTTCCAGTCACGCTGAATCAATTGCCAATTCCTCTTTTTCCTCCGGGTCTGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCGAGTGCTGTAAGTTCATCCAGCCAGGGTTCTTATCATGAAGATTTTGATGCCCTAGGTGATGTTTTTATTTGGGGAGAAGGTATCGGTGATGGAATTCTTGGTGGTGGTGTGCATAGAATTGGAACCTTATCTAGTTCTGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCGAAAGTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAAACATGCAGTTCTCGTTTCGAAGCAGGGAGAAATATATAGCTGGGGGGAGGAATCAGGAGGTAGGCTTGGACATGGTGTAGAAGTGGATGTTTTTCACCCTAAGCACATTGACACTCTCAGTGGAATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGTGCTGTTACATATTCTGGGGATCTTTATACCTGGGGTGATGGTACTCACAATTCTGGCTTGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAATTGGTAACATGGAGAGTGTACGTGTATCATATGTTTCCTGTGGGCCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTTACNTTTGGTGATGGAACTTTTGGTGCCTTAGGCCATGGAGATCATAGTAGCACAAATATTCCTCGCGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTAATAGATGAATCTGTGGAATCTTCCACGCAGTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGAGATAAAGGGCAACTTGGACATATTCATAAGGAACCTAGACTAGTTCCCAAATGTGTACTTGCATTGGGTAATGAAAACATTTGTCGTGTGGCTTGTGGCCACANTCTTACAGTTGCATTGACCACTTCAGGACATGTATATACAATGGGCAGTACAGCTTATGGACAACTTGGCAGTCCTGCAGCTGATGGGAAAGTCCCTATANGCGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCATGTGGCTCATATCATGTCGCGGTCCTGACTTCCAAGGCAGAGGTTTACACATGGGGGAAGGGTTTAAATGGGCAATTAGGTCATGGAGACAATGACCACAGGAATAAACCCACGCTTGTCGAGTTTTTTAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTATGTCTTCATAAATGGATACCGAGTGTTGATCATTCTGCATGTTCTGGCTGTCGTAATCCATTTAATTTCAGAAGAAAACGCCATAATTGTTACAATTGTGGACTTGTGTTTTGCAAATCATGCACCAGCAGGAAATCTATGAAAGCTTCCCTTGCTCCAAATTCCAACAAGCTATATCGGGTTTGTGATGACTGTTATTATAAACTTAAGAAAGCTGCTGAATCAGTATCCTGGGTGCAAACTCCTANCTTGAGGTGTGTCAGTTTGCATGACAGTAAGGCCATTAAAACACAGGGAACACTATTAAGACTTTCTTCTTTTGGTTCTATTGTTCAAGCAGAAAGCAGTCCGTTGAAGCTTCCAGACTCACACGATAGCCACATTTTTACACCTTTGAATGGAAAACTACAGCTGGGGGGTTTTGTTCCTTCAAAATCATCAAATTTTCTTTCTGGGGAATCTAGGAAACGCCTTTCANTTTCTGAGCCTGCTATAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCAAAGTCAAGCCCACGACAATCTTGTGAAGATATACATGACGATTTAAAACACAAAAATGATTTTCTAAGTCAAGAAGTTATAACTTTAAGGNCACAGGTTGAGGATCTCACTCGTAAGTCCAAAAGTCTTGAGGCAGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTGCAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACTGCTCAGTTGAAGGATTTGATGCAAAAGCTGCCAGAAGGACATAATGTTGACTCCAGCACAAATTCCTACGCTGAATCCACTAATAGGATTCTAGATCAGTCCTTAGATGAGAGCCATGTAACAAACACTATCACTCCCAAAAGTGAAAGCAGCAGCAATGCAGAAAGTCCGATATTACCTAATGGTACCAAAACACAAAATGGAAAGGCGGAGTGGGTGGTGCAAGATGAACCAGGCGTGTACATAAGTTTGTCTGCCCTGCCAGGTGGTGGTAATGAACTTAAGCGCGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAACAGGCTGAAAGGTGGTGGGCCGAAAATGGAACCAAAGTATTGGAGCGGCACAATATAGTTGCCTTATAGAATGCAAAGAGATCAGAACCTGTTTCCTTGAATCAAAAAAGTCAACCGTTTATATCTGTGACGCTTTATGGAAACAGTAAATTCTTTTTCCTAATCTCTCTTCCAAAATTAAGAACGATCTTTTGTCCAAAATTGACAGGTAGGATACGATATCATGAGAAAAAACANCAGTAGGAAGAAAACATTACTTTCCAGAAAAGTTCTAACCCCCCCCCCCAAAAAAAACCCCCACCAAAAAAAGGAATAGAGGAGGAAAATTTTCATTTTTGTACTCACTGACGAGCTGGGTCTTCTTTTTCCCCTCTTGGTACAACAGTGCAGATGCGTGTGTATGTTTTTCTTGCAGCTGAGGATTGTTTTGTTCAGTTCTTTTTCACCTTTTATTGTATAGCCACTTATCCTAGGAACCTAGTGAACTCTCATTTGTGCATTTTGTCAAAGGCGCTCGTTCCATTCATTGCATAGATAGCAAGGCACTGCACTCCATTTCACACTTTGCATTCTGCACATTATCTTATAGCTTTATTTTTTGGCCCCTCCAACACTTTTTCTGGGGTAAATTCCAACACTTGATCAACATTTGTCCTTGGAAGAGTCNGAAAATTTATTAGACGA

Protein Sequence

>Glyur000371s00032980.1
MADPQKTGLGDSRDIEQAITSLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFVGLKALVTRGNFCKWRFEPRSESQYSDSPKSGTRRSTPSVAPFVCDNGFHLLLFHTDPGDTDGVAFENSSQNKWVKAFSEIITYTAASKSSSHAESIANSSFSSGSVDNSSNRNSASEAFRVSLSSAVSSSSQGSYHEDFDALGDVFIWGEGIGDGILGGGVHRIGTLSSSEMDAFLPKALESKVVLDVHSIGCGYKHAVLVSKQGEIYSWGEESGGRLGHGVEVDVFHPKHIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGNEVSHWIPKKVIGNMESVRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVSCGVWHTAAVVEVIDESVESSTQSSSGRLFTWGDGDKGQLGHIHKEPRLVPKCVLALGNENICRVACGHXLTVALTTSGHVYTMGSTAYGQLGSPAADGKVPIXVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFFKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCKSCTSRKSMKASLAPNSNKLYRVCDDCYYKLKKAAESVSWVQTPXLRCVSLHDSKAIKTQGTLLRLSSFGSIVQAESSPLKLPDSHDSHIFTPLNGKLQLGGFVPSKSSNFLSGESRKRLSXSEPAIRISCQSTSPVSSKSSPRQSCEDIHDDLKHKNDFLSQEVITLRXQVEDLTRKSKSLEAELERTSKQLKEVTAVAADEAGKCKSAKEVIKSLTAQLKDLMQKLPEGHNVDSSTNSYAESTNRILDQSLDESHVTNTITPKSESSSNAESPILPNGTKTQNGKAEWVVQDEPGVYISLSALPGGGNELKRVRFSRRHFTEEQAERWWAENGTKVLERHNIVAL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00371	31127	42529	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0032065 cortical protein anchoring

cellular_component
GO:0005938 cell cortex

molecular_function

GO:0005515 protein binding

GO:0005543 phospholipid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000371s00032980.1	PF12814.2	Mcp5_PH	15	123	1.10E-05
Glyur000371s00032980.1	PF00415.13	RCC1	321	369	4.30E-12
Glyur000371s00032980.1	PF00415.13	RCC1	372	424	4.30E-09
Glyur000371s00032980.1	PF00415.13	RCC1	428	476	1.80E-12
Glyur000371s00032980.1	PF00415.13	RCC1	492	541	6.40E-14
Glyur000371s00032980.1	PF00415.13	RCC1	544	593	5.00E-06
Glyur000371s00032980.1	PF00415.13	RCC1	598	645	3.00E-14
Glyur000371s00032980.1	PF01363.16	FYVE	649	715	3.50E-14
Glyur000371s00032980.1	PF13713.1	BRX_N	884	915	8.00E-14
Glyur000371s00032980.1	PF08381.6	BRX	969	1026	5.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.604
SRR1783600	control	3.634
SRR1783602	moderate drought stress	3.002
SRR1811619	moderate drought stress	2.889

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.735
DRR006520	Root Summer glycyrrhizin high producing strain	4.646
DRR006521	Root Winter glycyrrhizin high producing strain	1.942
DRR006522	Root Winter glycyrrhizin high producing strain	1.823
DRR006523	Root Summer glycyrrhizin low producing strain	4.908
DRR006524	Root Summer glycyrrhizin low producing strain	4.916
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.870
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.826

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.066
SRR2868004	Drought Stress (root)	4.465
SRR2967015	Control (root)	4.923

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.747
SRR9715740	Leaf	0.793
SRR9715741	Leaf	0.760
SRR9715739	Root	0.312
SRR9715742	Root	2.768
SRR9715743	Root	2.710

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.267
SRR8749028	MeJA induced 9h	3.022
SRR8749029	MeJA induced 9h	2.740
SRR8749030	Uninduced	2.130
SRR8749031	Uninduced	1.800
SRR8749032	Uninduced	0.979

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.762
SRR8400027	Control - Root	6.818