Gene detail

Gene detail information of Glyur000370s00022677

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55460.1	1.00E-38	SC35-like splicing factor 30
NR	AGV54513.1	6.58E-101	splicing factor arginine/serine-rich 13A [Phaseolus vulgaris]
COG	YP_003526842.1	1.00E-08	RNP-1 like RNA-binding protein [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|Q8L3X8\|SRC30_ARATH	1.00E-44	Serine/arginine-rich SC35-like splicing factor SCL30
trEMBL	tr\|T2DP81\|T2DP81_PHAVU	2.00E-101	Splicing factor arginine/serine-rich 13A {ECO:0000313\|EMBL:AGV54513.1}

Sequence

Transcript Sequence

>Glyur000370s00022677.1
GAAGAAAAGCAGGTTTCCTCTGCATTTCTGTTTTCTTCCGTGTACGAGCTTGGGAGAGGTTCCTTTCTCTGTGATCGATCACTCAAGATGAGGAGGCACAGTCCAGGTTACTACAGCCCTCCTCGGAGAGGATACGGTGGCAGAGGGCCACCTAGTAGGCGGGGATACGGTGGGGGAAGGCGCAGGGAAAACAGCCAGGGAAGCCTCTTGGTTCGGAACATTCCTCTGGATTGCAGAGCTGAGGAGCTTCGTGTCCCATTCGAGCGATTCGGACCGGTTCGCGATGTCTACATACCGAAGGACTATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAGTTTGTGGATCCTTACGATGCCTCAGAGGCGCAGTACCATATGAACAGACAGATTTTTGCTGGACGGGAAATATCCGTGGTTGTGGCTTCAGAGACAAGAAAAAGACCAGAGGAGATGCGTCAAAGGACTAGTAGGTCCAGAGGACCAGGGAGCTATGGGGGGCAAAGGTCTTATTACGAAAATTGTTTACTTGTCTTAAAAAGTTGCTGCTTTGTCCTGGGCGTTCTCGATCCCGATCTCGTTCTCGCTCAATTACCAGATCAAGATCACCACCTTATCACTCTGGTTCTAGGAATCGCTATCGCTCAAGGCAAGTCATTTTCTCCTGCCCCAAGACGGCAAAGTGACTACTCTGTTTCCCCTAGAAGGCAAGCAGAACACCCTAGATCCCCTAGATCCCCAAGAGGTCCTCATCCTCTTGGGGATCGAAATGTAGATCATAAGCGCAGGTCATATTCTCCTGCTTATGACAATGGTGCTGATCAGAATCAAAGCAATGGATATGCTGAGAAATCTGTCTACAAATCTGAGGGTGATCGAGGCCAGTGGAAGTCATCCCTGCGAAGAACATCAAGATCACCCGTTGGATCTAGATCAAGATCAAGATCTGCTGAACTGTCACCTAGGCGTGGAAGATGAGGTTGCAGGTTGTTGTTGGCAATGTGCCTACTGGACTTGTGTACAAATCCTTCAATTTGCCAGGATATTTACTAAAACTTGTAGTCTGCTTAAAAGATTGCGTATTATGATGGATGAATGTATAATCTTTAGATTTGTTACTGATATTGCTGCGTTTTCGACATTCTGAACTTGGTAAAACTTGACTGATGAATTGTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00370	175064	178352	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000370s00022677.1	PF00076.17	RRM_1	69	138	1.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.267
SRR1783600	control	11.355
SRR1783602	moderate drought stress	16.451
SRR1811619	moderate drought stress	17.228

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.777
DRR006520	Root Summer glycyrrhizin high producing strain	22.815
DRR006521	Root Winter glycyrrhizin high producing strain	40.712
DRR006522	Root Winter glycyrrhizin high producing strain	38.227
DRR006523	Root Summer glycyrrhizin low producing strain	20.366
DRR006524	Root Summer glycyrrhizin low producing strain	20.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.799
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.650

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.115
SRR2868004	Drought Stress (root)	24.538
SRR2967015	Control (root)	27.544

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.201
SRR9715740	Leaf	15.120
SRR9715741	Leaf	24.787
SRR9715739	Root	22.446
SRR9715742	Root	25.175
SRR9715743	Root	24.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.378
SRR8749028	MeJA induced 9h	8.875
SRR8749029	MeJA induced 9h	10.941
SRR8749030	Uninduced	8.048
SRR8749031	Uninduced	9.413
SRR8749032	Uninduced	18.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.803
SRR8400027	Control - Root	35.553