Gene detail information of Glyur000370s00022676 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55470.2 | 4.00E-45 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | NP_001235151.1 | 5.68E-95 | uncharacterized protein LOC100500493 [Glycine max] |
| Swissprot | tr|Q9ZT47|PP16A_CUCMA | 1.00E-39 | 16 kDa phloem protein 1 |
| trEMBL | tr|C6T1X1|C6T1X1_SOYBN | 2.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G41520.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00370 | 167685 | 170884 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000370s00022676.1 | PF00168.25 | C2 | 7 | 90 | 3.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.640 |
| SRR1783600 | control | 16.458 |
| SRR1783602 | moderate drought stress | 9.049 |
| SRR1811619 | moderate drought stress | 8.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 66.533 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 66.792 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 63.337 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 62.007 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 149.442 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 151.992 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.803 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.522 |
| SRR2868004 | Drought Stress (root) | 68.405 |
| SRR2967015 | Control (root) | 44.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.648 |
| SRR9715740 | Leaf | 21.646 |
| SRR9715741 | Leaf | 39.958 |
| SRR9715739 | Root | 15.028 |
| SRR9715742 | Root | 18.490 |
| SRR9715743 | Root | 17.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 111.850 |
| SRR8749028 | MeJA induced 9h | 77.352 |
| SRR8749029 | MeJA induced 9h | 169.485 |
| SRR8749030 | Uninduced | 186.468 |
| SRR8749031 | Uninduced | 195.035 |
| SRR8749032 | Uninduced | 180.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.651 |
| SRR8400027 | Control - Root | 51.202 |