Gene detail

Gene detail information of Glyur000370s00022670.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G48670.2	XH/XS domain-containing protein
NR	XP_004490889.1	PREDICTED: uncharacterized protein LOC101499007 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8VZ79\|IDN2_ARATH	Protein INVOLVED IN DE NOVO 2 {ECO:0000303\|PubMed:19915591}
trEMBL	tr\|K7M5B9\|K7M5B9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G07370.3}

Sequence

Transcript Sequence

>Glyur000370s00022670.1
ATGGAGGTGCTCCGAGGTGCCATAATATTGAGCCTAGGAGAAATTCTAATGGCTCACTGCACCAACAAGGATACTGATATAAGAGCATCTCATTTGAGTTGGTGGTATGTGGTTAAATCTTACGAAGAACTCAGAAATGGGAGTCACAAGGTGAAAACCTCATATGAGACTTTCAGTTGTCCATTCTGCCCTGGGAGAAAACAGGATTACAAGTACAATGAGCTCCTTAATCATGCTTATGGGGTGGGTAGGAGTAGTTCAGAAAGGAGAAGTGCTAAAGAGAAGGGTAATCATCTGGCTTTGGTAAAATATTTGGAAGAGGACCTTATGAGTACGGGTGGCCAATCAAAACCTGTAGGTACAAACACAATAAGCCCAGGACAAACTGTAATGGCTCACTGCTCTATCAAGGATATTGATACAAGTGCATCTCAAATAAGTTGGTGGTATGTGGATGCATCTTATGAAGAGCTCCGAAAGGGAATTCATAATGTGAAAACCTCAGACGAGACTTTCATCTGTCCATACTGCCCCAGGAGAAAACTGGATTATGTGTACAGGGAACTCCTAGAACATGCTTTTATGGTGGGCCGGAGTAGTTCAGAAAAGAAAAGTGCTAGAGAGAGGGCTAATCATCTGGCTTTATTGAAATATCTGGAAAAGGATCTTACGAGTACAAATGGTCCGTCAAAACCTGTTGATAAAGGTACAAAATTAATAAGCCCAGGACAAACTGCAATGGCTCACTGCTCTAACAAGGATACTGATAAAAGTGCATCTCAAATAAGTTGGTGGTATGTAGATAAATTTTATAAAGAACTAAAGAAGGGAAGTCACAATGTGAGAACCTCGGATGAGACTTTCACTTGTCCATACTGCCCTAAAATGAAAAAACAGGAATATGTGTACAGGGAACTCCTTGAGCATGCTTCTGGGGTGGGCCAGAGTAGTTCACAAAAGAGAAGTATCAAAGAGAAGGCAACTCATTTGGCTTTAGTGAGATATTTGAAAATGGATCTTATGAATGTGAATGGTTCATCAAAACCTGTTGATGAAGGAACCATAATACCAAGCCCAGGAGAAACTGTGATGAGTCGCTGCTCTGACAAAGATACTGATATAAGTGCATCTCAAATAAGTGGGTGGCATGTAGATAAATCATATGAAGAACTCAAAAAAGGGAGTCACAATGTGAAAACCTCATATGAGACTTTCACATGCCCATATTGCCCCAATAAAAAGAGAAAACGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCGGAGTAGCTCACAAAAGAGAAGCGCCATTGAAAAGGCCAATCATCTAGCTTTAGTCAAATATTTGAAAAAGGATCTCATAAATGTGGGTGCTTCATCAGAACCTATGGATGAAGGCACCATAATATTGAACCCAGGAGAAATTATAACGGGTCACTACTCTCACAAGGATACTAATAAAAGGACATCTCAAACAAATTGGTGGTATATAGAAAAATCCTATGTAGAACTCAAAAAGGGTAGTCACAAAGTGAAAACCTCAGAAGAGACTTTCTCATGTCCGTACTGCCCGAATAATAGAAAACAGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGCTCACAAAAGAGAAGTGCCATGGAAAAGGCCAATCATCTGGCTTTAGTGAAATATTTGGAAAAGGATCTTATGAATGTGGATCATCCAACTAAACCTGCAAATGAAGGCAGTGCTGTCAATTCTGATAAGCAGTTTGTGTGGCCATGGACTGGGATTGTGGTTAACATTCCCACTAGACAAACAGAAGATGGACACTGTTTTGGGGAAAGTGGTTCCAAGCTGAGGGATGAATACCGAAGCAGGGGTTTTAATCCACATAGAGTCCGAACTCTTTGGAGTTTCTGGGGTCACTCTGGAGCTGCAATTGTGGAATTTGATAAAAGTTGGGTAGGCTTACATAATGCATTGGCATTTGAAAGAGCATATGAATTAGATGATCATGGGAAAAAAGACTGGTTTGCTCATACCGAGCAGAAGTCCGGTCTTTATGCATGGGTTGCCCGAGCTGATGACTACAAAATGTACAACATAATTGGGGAACAACTGCAGAAAATGGGGGATGTTATAACCATATCTGAACTTATGGAAGAAGAAGCTCGAAGGTTGGATAAACTTATGTCCAGTATGAAAAATATTCTTCAGGNCAAGAACAAGAAATTAAAGGAAATGGAAGTTATATGTAGTGAAATTACACTTCGCATGGACATTGTAATGGAGGAAAAAGACAGGCTCACTCAAGCTCACGGTCAAGAGATGAAGAAAATACAGTCAAGTGCAACTCAACACTTTCAGCGTGTTTTGAATGGTCATGAAAGGCTGAAGTTGCAACTGGAATCTCAGAAAAGAGAACTTGAGTTGCGAAGAATTGAACTGGAAAAACGTGAGGCACACAATGAAAGTGAAAGAAAAAAGTTGGAAGAACAGATTAAGGAGACTGCAGTGAAAAATAGCTTTCTTGAAATGGCTGTTCTGGAGGAACAGAAAGCTGGTGAAAATATTTTGAAACTGACTGCAGATCACAAGCGGGAAAAAGAACAACTCCATGCTAAAATCATTCAGCTTGAAAAACAACTGAATGTGAAACAAACACTGGAATTGGAGATTCAACAATTAAAAGGAAAATTAAATGTCATGAAGCACATGGACGATGATGAAGACTCAGAAATTCTGAATAAGATGGATGCCTTACATAAGGATTTAAGAGAAAAGGAACACTCACTTCGAGACTTGGATGCATTGAACCAAACACTGATCATTAAAGAGCGTAAGAGCAATGATGAACTGCAGGAAGCTCGAAAAGAATTGATTAATGGCATTAAAGAGATATCTAGTCGTGCAAATATTGGTGTGAAGAGAATGGGGGAGCTTGATACTAGAGCATTCCTAGAAGCTATGAAGAGAAAATATAATGCGGAGGATGCAGAAGATAGAGCTTCAGAACTGTGTTCATTATGGGAAGAGTATCTGAAGGACCCGGACTGGCATCCGTTTAAAATTGCTACAATTGATGAAGGGAAACATCAGGAAATCATAGATGATAAAGATGAAAAGCTGAAAGGACTGAAAAACGAGATGGGTGAAGGAGTCTACAAAGCTGTGGTGGCAGCTTTGACAGAGATAAATGAATATAATCCAAGTGGGCGGTATGTAACCTCAGAACTATGGAATTATGAAGAAGGAAAGAGAGCAACTTTGCAAGACGGAGTGCAATTTTTATTGAAGCAGTGGAAACTACATAAACAAAAAAGGGGAATGATATGAAGCCTGGTATGTGTGTAATTAGAATAAGATACTGCATTTTTCTTTTGAACTATATAGCTAGAAAGAAGGGGATTATATTGCTGAAAGGGTGGTGTTGGTTACAGGAGTTAACGTGTTTTTTTGCCAGAGGGAATTATACTGTGGAGTCAACCTGCCACATCTAATGGTTGAACATATTTAAGGAATAAGGGATATATTTTTATTTAGACTGTTTAGCTTCTATGGAGGTCTTTCTGATAATGAAACCGTATTCATAACCACAGCATTTGTGCTTATGTTTATTGTC

Protein Sequence

>Glyur000370s00022670.1
MEVLRGAIILSLGEILMAHCTNKDTDIRASHLSWWYVVKSYEELRNGSHKVKTSYETFSCPFCPGRKQDYKYNELLNHAYGVGRSSSERRSAKEKGNHLALVKYLEEDLMSTGGQSKPVGTNTISPGQTVMAHCSIKDIDTSASQISWWYVDASYEELRKGIHNVKTSDETFICPYCPRRKLDYVYRELLEHAFMVGRSSSEKKSARERANHLALLKYLEKDLTSTNGPSKPVDKGTKLISPGQTAMAHCSNKDTDKSASQISWWYVDKFYKELKKGSHNVRTSDETFTCPYCPKMKKQEYVYRELLEHASGVGQSSSQKRSIKEKATHLALVRYLKMDLMNVNGSSKPVDEGTIIPSPGETVMSRCSDKDTDISASQISGWHVDKSYEELKKGSHNVKTSYETFTCPYCPNKKRKRDYVYREILEHASGVGRSSSQKRSAIEKANHLALVKYLKKDLINVGASSEPMDEGTIILNPGEIITGHYSHKDTNKRTSQTNWWYIEKSYVELKKGSHKVKTSEETFSCPYCPNNRKQDYVYREILEHASGVGQSSSQKRSAMEKANHLALVKYLEKDLMNVDHPTKPANEGSAVNSDKQFVWPWTGIVVNIPTRQTEDGHCFGESGSKLRDEYRSRGFNPHRVRTLWSFWGHSGAAIVEFDKSWVGLHNALAFERAYELDDHGKKDWFAHTEQKSGLYAWVARADDYKMYNIIGEQLQKMGDVITISELMEEEARRLDKLMSSMKNILQXKNKKLKEMEVICSEITLRMDIVMEEKDRLTQAHGQEMKKIQSSATQHFQRVLNGHERLKLQLESQKRELELRRIELEKREAHNESERKKLEEQIKETAVKNSFLEMAVLEEQKAGENILKLTADHKREKEQLHAKIIQLEKQLNVKQTLELEIQQLKGKLNVMKHMDDDEDSEILNKMDALHKDLREKEHSLRDLDALNQTLIIKERKSNDELQEARKELINGIKEISSRANIGVKRMGELDTRAFLEAMKRKYNAEDAEDRASELCSLWEEYLKDPDWHPFKIATIDEGKHQEIIDDKDEKLKGLKNEMGEGVYKAVVAALTEINEYNPSGRYVTSELWNYEEGKRATLQDGVQFLLKQWKLHKQKRGMI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00370	127468	137586	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0031047 gene silencing by RNA

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000370s00022670.1	PF03470.9	zf-XS	60	102	6.10E-17
Glyur000370s00022670.1	PF03470.9	zf-XS	174	215	1.20E-11
Glyur000370s00022670.1	PF03470.9	zf-XS	290	333	6.70E-17
Glyur000370s00022670.1	PF03470.9	zf-XS	407	451	6.40E-17
Glyur000370s00022670.1	PF03470.9	zf-XS	525	568	1.80E-18
Glyur000370s00022670.1	PF03468.9	XS	594	710	8.00E-38
Glyur000370s00022670.1	PF03469.9	XH	983	1115	3.30E-50

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.975
SRR1783600	control	12.015
SRR1783602	moderate drought stress	13.347
SRR1811619	moderate drought stress	13.117

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.020
DRR006520	Root Summer glycyrrhizin high producing strain	13.016
DRR006521	Root Winter glycyrrhizin high producing strain	7.470
DRR006522	Root Winter glycyrrhizin high producing strain	7.379
DRR006523	Root Summer glycyrrhizin low producing strain	10.758
DRR006524	Root Summer glycyrrhizin low producing strain	10.756
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.773
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.806

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.122
SRR2868004	Drought Stress (root)	15.763
SRR2967015	Control (root)	15.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.741
SRR9715740	Leaf	8.256
SRR9715741	Leaf	7.127
SRR9715739	Root	0.630
SRR9715742	Root	3.848
SRR9715743	Root	2.964

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.329
SRR8749028	MeJA induced 9h	7.965
SRR8749029	MeJA induced 9h	5.625
SRR8749030	Uninduced	10.351
SRR8749031	Uninduced	10.254
SRR8749032	Uninduced	4.923

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.299
SRR8400027	Control - Root	23.020