Gene detail information of Glyur000370s00022669 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39700.1 | 6.00E-117 | expansin A4 |
| NR | XP_003519349.1 | 2.25E-163 | PREDICTED: expansin-A4-like [Glycine max] |
| Swissprot | tr|O48818|EXPA4_ARATH | 4.00E-149 | Expansin-A4 (Precursor) |
| trEMBL | tr|I1JI00|I1JI00_SOYBN | 8.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G41590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00370 | 121352 | 123931 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000370s00022669.1 | PF03330.13 | DPBB_1 | 56 | 143 | 3.50E-24 |
| Glyur000370s00022669.1 | PF01357.16 | Pollen_allerg_1 | 154 | 231 | 3.60E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.923 |
| SRR1783600 | control | 21.501 |
| SRR1783602 | moderate drought stress | 8.215 |
| SRR1811619 | moderate drought stress | 7.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.428 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.281 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.205 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.389 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.010 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.575 |
| SRR2868004 | Drought Stress (root) | 25.345 |
| SRR2967015 | Control (root) | 26.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.617 |
| SRR9715740 | Leaf | 0.987 |
| SRR9715741 | Leaf | 5.565 |
| SRR9715739 | Root | 6.960 |
| SRR9715742 | Root | 9.406 |
| SRR9715743 | Root | 9.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 89.786 |
| SRR8749028 | MeJA induced 9h | 40.136 |
| SRR8749029 | MeJA induced 9h | 20.553 |
| SRR8749030 | Uninduced | 33.203 |
| SRR8749031 | Uninduced | 8.187 |
| SRR8749032 | Uninduced | 19.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.776 |
| SRR8400027 | Control - Root | 51.895 |