Gene detail

Gene detail information of Glyur000370s00022667

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13830.1	4.00E-78	FtsJ-like methyltransferase family protein
NR	XP_004490883.1	1.03E-121	PREDICTED: ribosomal RNA large subunit methyltransferase E-like [Cicer arietinum]
COG	YP_001528259.1	5.00E-25	ribosomal RNA methyltransferase RrmJ/FtsJ [Desulfococcus oleovorans Hxd3]
trEMBL	tr\|G7KBS2\|G7KBS2_MEDTR	3.00E-115	Ribosomal RNA large subunit methyltransferase {ECO:0000313\|EMBL:AES99375.1}

Sequence

Transcript Sequence

>Glyur000370s00022667.1
AACCAATCTTATTTCTAAAANCTTAAACCTTACACAGGTTATACTCGGAGGTTTAGCGAAGAGGTGAATGGGGTGAGATGGGTGGGAGTGGAGCGCCGGATTTCTACTACAAGGAGGCTCAACGGCTTGGCTACGTGGCTCGCTCCGCCTTCAAGTTGGTTCAGATTCAGAAGCAGCACAAGCTGATCAAGCCCGGTTCCTCCGTTCTCGACCTCGGNTGCGCTCCCGGTTCCTGGCTCCAGGTCGCTTGTCAGAGCCTGGGTCCNCTCCGACTCGGTGGCTCCGTTCTCGGCATCGACCATAAGAAAGTCAAGGTCCCTCCCCTTCACTGCGATTCCAGGGTTCACACCATCTCCGCTGACGTCATGACCCTCCCCAAACACCAACTCACCGCTCTTTCTCCCCAGGATGCGGCTCTGTCATTTGAGTTAGGGATGCGAGCGTTGGATTTGGCCGTTGGCAGGGTTGCTTCTGTTCATTATTCTGATTCTGAATATGGCGGTAATCGGGAGGAGGAGCAAAAGGATGATACGTCNGGTTCGGATGATGACAGGGGAGTGTTGCGAGTTGGAGGGCATCTTGTTATCAAGCTTTTGGAGAGTGAAGATGCCAAAGAAATAAGCCAGATTTCTAAACCGTTGTTTACAAAGTCGTCGTGGCTGAGACCTAAGGCCACGAGACCTTCATCGCGAGAGATCTATTTGATATGTCAAGGTTTAAAGCCGGTCACAAAGATATAGATTCTTTTACAGGGTACTCTTTATCTTGGTGAATGTTGGACATGAGCAGAGTACAAATTTTGTAAGTTGTGTGCAATTGTGAAATTCATTATTTTATATCTAGCTTTTGATGCTAATACTGTTCTTGAATTTTAACTCTGCAATGTCTTCTGATCTGTTAAGGGTGGTGAGATGTTATGATTGCAATGTTACCCCACCTGCCTCTTATAACTTTTTACTCTCTGCAATTCGCTGAGCTTGCACATGTCCAATTAGGTGTTTAACTGTGTGCTTGTAAAATATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00370	96087	97671	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001510 RNA methylation

GO:0032259 methylation

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000370s00022667.1	PF01728.14	FtsJ	19	213	1.50E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.140
SRR1783600	control	3.038
SRR1783602	moderate drought stress	5.997
SRR1811619	moderate drought stress	5.943

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.906
DRR006520	Root Summer glycyrrhizin high producing strain	10.063
DRR006521	Root Winter glycyrrhizin high producing strain	19.231
DRR006522	Root Winter glycyrrhizin high producing strain	17.641
DRR006523	Root Summer glycyrrhizin low producing strain	7.970
DRR006524	Root Summer glycyrrhizin low producing strain	8.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.044
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.831

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.619
SRR2868004	Drought Stress (root)	6.548
SRR2967015	Control (root)	6.241

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.349
SRR9715740	Leaf	5.596
SRR9715741	Leaf	3.362
SRR9715739	Root	9.347
SRR9715742	Root	9.290
SRR9715743	Root	6.365

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.824
SRR8749028	MeJA induced 9h	6.914
SRR8749029	MeJA induced 9h	9.104
SRR8749030	Uninduced	0.776
SRR8749031	Uninduced	0.536
SRR8749032	Uninduced	2.846

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.405
SRR8400027	Control - Root	9.115