Gene detail

Gene detail information of Glyur000370s00022661.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55530.1	1.00E-90	RING/U-box superfamily protein
NR	NP_001241380.1	9.56E-160	uncharacterized protein LOC100777936 [Glycine max]
Swissprot	tr\|Q9M2S6\|SDIR1_ARATH	1.00E-142	E3 ubiquitin-protein ligase SDIR1
trEMBL	tr\|C6TKE4\|C6TKE4_SOYBN	4.00E-160	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G04160.1}

Sequence

Transcript Sequence

>Glyur000370s00022661.1
CTTATTTTTTAATATAAAAAAATACTTATTTTTGTCACGTCTTTTTTTTTGTGCGTGCCACGTCATTTTATAGCGAAAGCACAGCAAGACTTTATCCATTCCATTGAGCCCAAACCCACTGCAATAGCAGCCACAAATTACTTTCAGCCCAGCCCAAGACAAATGACAGCGGCAAACGGAACCAATAAAAGGGAAAACAAAAATTTACAGCNAAAGCGGTCATCTTCTTCTTCGTGGCGTAGTAGAATCGAGAGATCTAACGGAACGTTGCGTTTTGATCGGAACGCCGTTTCCGATCACCGCTCCCTTTTTTCACTCTCAGGCTTTCATAGGCAGCACCGAACCGGTTTTCATCGCGAACTTATATCCCATTCTGCTTTAGTCAACTGGTTGAGTTTAAATACAAGCTTCCAAATATATAGAGTCATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATGTAGAAGGTGGATTTCCGGGATTTATGCCTGAGAGGCGTGCATTGCGTGTTCATGGAGCACGTCCTAGTAATTCCAATTCACTCACATTTCTTGTAACAGTTCTCCTGTTATTCATGATACTGAACTCCCACCAGATGTCACCAAATTTCCTGCTGTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCGACATGTCAACAGCTACAAGCTCAGGCCCAAGCTCATGCTCATGCAGCAGCAGCAAGTGGACTTCTTGGCCACACTGAACTACGGCTGCATATGCCACCATCAATAGCACTTGCAACTAGGGGCCGTCTGCAAGGCCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATAATCTAGATTATGAAGCACTAAGAGCTCTGGATTCAGATAATGTTCCTACTGCGCCTTCTATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCATGAATACAAGGTTTCNGGTCCACAAAATGGTGCATCCTCAGCACAACAGGCTTCATCTTCCACTCCTGGCGAGAAGAAGCAAGATAGTTCAAATGCAGTTGGGAGCATGAAAGCCTCCGATGATGAGTTGACTTGCAGTGTATGTTTGGAGCAAGTTATTGTCGGAGATTTACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCATGCTAGTTGCATTGATCCCTGGCTAAGGCAACAAGGAACGTGCCCTGTCTGTAAATTCAGAGCAGGGTCTGGGTGGCATGAAACTGGACAAAATGATATCGCAGACATGGTTTGAGTACCCCTAATTTTGTGTGGGGTATAATCAGCTGTAACCCTCTCTAATGTATCAGAACAAGTGGCTAATGACGTGTAATTACCCTGTCTGACACGGGGATCTGAGAAGTAGCAGAATACCGTGTAACAACTATAAAATACTANACTTTTGCCTGCCATTGAAATTACCAAGTATCTTGGGCCACTGTGTACAGCCTAATAGAATAGACAATGACTTGTCTCTACAATGGGGACCTCATTTTACATATATTTGGGGATGCAACCTTTCTTTTTGGAGGGGTTGTCTATCTTTTTGGAGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00370	28552	32871	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000370s00022661.1	PF13639.1	zf-RING_2	302	344	5.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.649
SRR1783600	control	31.781
SRR1783602	moderate drought stress	37.284
SRR1811619	moderate drought stress	37.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	37.484
DRR006520	Root Summer glycyrrhizin high producing strain	36.849
DRR006521	Root Winter glycyrrhizin high producing strain	70.597
DRR006522	Root Winter glycyrrhizin high producing strain	69.476
DRR006523	Root Summer glycyrrhizin low producing strain	34.041
DRR006524	Root Summer glycyrrhizin low producing strain	34.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.528
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.239

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.712
SRR2868004	Drought Stress (root)	60.624
SRR2967015	Control (root)	62.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.513
SRR9715740	Leaf	28.086
SRR9715741	Leaf	35.768
SRR9715739	Root	34.759
SRR9715742	Root	30.934
SRR9715743	Root	30.397

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.924
SRR8749028	MeJA induced 9h	52.152
SRR8749029	MeJA induced 9h	58.453
SRR8749030	Uninduced	61.809
SRR8749031	Uninduced	59.856
SRR8749032	Uninduced	75.342

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.206
SRR8400027	Control - Root	41.820