Gene detail

Gene detail information of Glyur000370s00022656

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G11430.1	glycerol-3-phosphate acyltransferase 5
NR	AES99401.2	glycerol-3-phosphate acyltransferase [Medicago truncatula]
Swissprot	tr\|Q9CAY3\|GPAT5_ARATH	Glycerol-3-phosphate acyltransferase 5
trEMBL	tr\|G7KGS4\|G7KGS4_MEDTR	Glycerol-3-phosphate acyltransferase {ECO:0000313\|EMBL:AES99401.2}

Sequence

Transcript Sequence

>Glyur000370s00022656.1
AAAAAAACGTAGAGAGAGAAAGAGAGGCAATTGGATTGGTATCCGAAGTGGTTGAAAAACTGATAAACGGCCTTATAGTTCTAATTAGCACTATAGAGACCAGTCAAATAAGCTAAGAGCCCAATTTCATTTCCTAAATCTTATCTTATAAACCATAATAAAAGCCAACAATCATCCTAATCAACAGNAAGAGTGAAACATTGAGAACCTCAAAAATTTCAAACACACAAAAAAAAAATTATAGCAAAACATTGTACGCGTGATTGAAAGAGAAGTTGAATTGAGGTAACTCGTGATTGATCCTAATGGAGTNTAGTGTTGTCTCTGAGCTAGAAGGCACGCTTGTGAAGGACACGGATGCATTCTCCTACTTCATGTTGGTAGCGTTCGAAGCATCCGGTTTGGTTCGGTTNGGGTTGTTGTTAATCCTATGGCCCATGATTCGGTTCCTGGACATGGCCGGCATGGGGGACAAAGGGCTGAAGCTGATGATCTTCGTGGCGGTAGCCGGGGTTCCGAAGTCGGAGATTGAATCAGTGGCGAGGGCGGTTTTGCCTAAGTTCTACATGGATGACCTTGACATGGACGCGTGGAAGGTGTTCAGTTCCTATGACAAGAGGGTCGTTGTTACCAAAACGCCAAGGGTGATGGTGGAGAGGTTCGTGAAGGAGCATTTGCGTGCTGATGAAGTGATTGGGAGCGAGCTTTCCTTCAATAGGTTTGGGCTTGCCACTGGGTTTGTCCAAGGTGACGACTCGGACGTTGATTCCATTTCTCAAAGGATTGCTAAGCTTTTCAATAATGAAGCACCCACTTTGGGTATGGCAAGGCCTAGTAGTACTACATCAAACAGTAGTTCCTTCTCCCACCTTTGCAAGGAACAAAAGGAACCACCATTTATGACAAGCCAAAAGTACAATGACCACCAACAGCTGCTCCGGCCAAATCCGGTGATCTTCCACGACGGCCGACTAGTGAAGCGGCCGACACCAGCCACCTCCCTACTAATCCTCCTATGGATCCCCATAGGCATTTGTTTGGCCATAATCCGCCTAGCCATGGGCTCCATCTTACCCTTTTGGGCAATNCCCCACATGTCAAAGCTATTCGGCGGCAAAGTCATCGTGAAGGGCAAACCACCCCTCCCTCCCGCTGCCAACAACTCCGGCGTCCTCTTCGTGTGCACCCACCGCACCCTAATGGACCCCNTCGTCCTCTCCTCCGTCCTCCGTCGCAAGATCCCGGCGGTGACATACTCCGTCTCCCGGCTATCGGAAATCCTCTCCCCAATCCCCACCGTGAGGCTAACAAGGACGCGCCACGTGGACGCCGAGAAAATAAAACGCGAGCTATCCAAGGGTGACTTGGTCGTTTGCCCCGAGGGAACGACGTGTCGTGAGCCTTTCCTTTTGAGGTTCAGTGCATTGTTTGCGGAGCTAACTGACCGGATAGTACCGGTTGCCATGAACTATAGGGTAGGGTTTTTTCATGCCACCACCGCGAGGGGTTGGAAGGGTTTGGACCCGGTTTTCTTCTTCATGAACCCGAGGCCGGTTTATGAGGTCACGTTCTTGAACCAGTTGCCGGTTGAGGCCACGTGTTCTTCGGGGAAGAGTCCACACGATGTGGCTAATTATGTGCAGAGGATATTGGCGGCAACGTTGGGGTTTGAGTGTACCAACTTTACGAGGAAAGACAAGTATAGGGTCTTGGCTGGGAATGATGGCATCGTGTCGGTGTCTTGTAGTACTTCCTCCTTGNTTAATCGGGTCATGAAGATGGTGAGCACATTCAAGCCATTTATTATACAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00370	8203	10552	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13508	GPAT	EC:2.3.1.15	Glycerolipid metabolism	map00561
			Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000370s00022656.1	PF01553.16	Acyltransferase	279	386	1.00E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.378
SRR1783600	control	5.452
SRR1783602	moderate drought stress	6.799
SRR1811619	moderate drought stress	7.002

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.416
DRR006520	Root Summer glycyrrhizin high producing strain	0.357
DRR006521	Root Winter glycyrrhizin high producing strain	0.061
DRR006522	Root Winter glycyrrhizin high producing strain	0.059
DRR006523	Root Summer glycyrrhizin low producing strain	0.182
DRR006524	Root Summer glycyrrhizin low producing strain	0.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.294
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.296

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.231
SRR2868004	Drought Stress (root)	20.423
SRR2967015	Control (root)	19.865

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.464
SRR9715740	Leaf	5.690
SRR9715741	Leaf	4.647
SRR9715739	Root	23.789
SRR9715742	Root	10.125
SRR9715743	Root	12.408

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.074
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	3.649
SRR8749031	Uninduced	11.019
SRR8749032	Uninduced	3.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.869
SRR8400027	Control - Root	59.968