Gene detail information of Glyur000369s00020554 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48810.1 | 2.00E-34 | cytochrome B5 isoform D |
| NR | NP_001239968.1 | 6.70E-75 | uncharacterized protein LOC100788796 [Glycine max] |
| COG | YP_008870122.1 | 2.00E-13 | soluble cytochrome b558 [candidate division WWE3 bacterium RAAC2_WWE3_1] |
| Swissprot | tr|Q9ZWT2|CYB5D_ARATH | 7.00E-56 | Cytochrome B5 isoform D {ECO:0000303|PubMed:19054355} |
| trEMBL | tr|C6TFJ7|C6TFJ7_SOYBN | 2.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G42070.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00369 | 115213 | 118131 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000369s00020554.1 | PF00173.23 | Cyt-b5 | 7 | 81 | 3.40E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.976 |
| SRR1783600 | control | 32.441 |
| SRR1783602 | moderate drought stress | 15.285 |
| SRR1811619 | moderate drought stress | 14.892 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.473 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 28.866 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.476 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.005 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.347 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.545 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.096 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 110.334 |
| SRR2868004 | Drought Stress (root) | 68.135 |
| SRR2967015 | Control (root) | 55.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.635 |
| SRR9715740 | Leaf | 7.043 |
| SRR9715741 | Leaf | 8.217 |
| SRR9715739 | Root | 25.308 |
| SRR9715742 | Root | 18.940 |
| SRR9715743 | Root | 19.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 68.640 |
| SRR8749028 | MeJA induced 9h | 39.471 |
| SRR8749029 | MeJA induced 9h | 67.298 |
| SRR8749030 | Uninduced | 10.574 |
| SRR8749031 | Uninduced | 10.862 |
| SRR8749032 | Uninduced | 6.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 78.724 |
| SRR8400027 | Control - Root | 73.889 |