Gene detail information of Glyur000369s00020549 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46710.1 | 2.00E-132 | Rho GTPase activating protein with PAK-box/P21-Rho-binding domain |
| NR | XP_007147346.1 | 0 | hypothetical protein PHAVU_006G116300g [Phaseolus vulgaris] |
| Swissprot | tr|Q8GYY5|RGAP3_ARATH | 3.00E-165 | Rho GTPase-activating protein 3 |
| trEMBL | tr|V7BQK9|V7BQK9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW19340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00369 | 67463 | 70661 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000369s00020549.1 | PF00786.23 | PBD | 125 | 160 | 4.20E-09 |
| Glyur000369s00020549.1 | PF00620.22 | RhoGAP | 188 | 323 | 3.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.333 |
| SRR1783600 | control | 5.435 |
| SRR1783602 | moderate drought stress | 4.859 |
| SRR1811619 | moderate drought stress | 4.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.052 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.127 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.279 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.262 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.214 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.328 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.765 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.070 |
| SRR2868004 | Drought Stress (root) | 24.714 |
| SRR2967015 | Control (root) | 28.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.940 |
| SRR9715740 | Leaf | 2.329 |
| SRR9715741 | Leaf | 1.787 |
| SRR9715739 | Root | 3.550 |
| SRR9715742 | Root | 4.672 |
| SRR9715743 | Root | 4.619 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.748 |
| SRR8749028 | MeJA induced 9h | 1.192 |
| SRR8749029 | MeJA induced 9h | 0.823 |
| SRR8749030 | Uninduced | 0.239 |
| SRR8749031 | Uninduced | 0.230 |
| SRR8749032 | Uninduced | 0.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.013 |
| SRR8400027 | Control - Root | 17.103 |