Gene detail

Gene detail information of Glyur000369s00020543

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01120.1	0	3-ketoacyl-CoA synthase 1
NR	XP_003626601.1	0	3-ketoacyl-CoA synthase [Medicago truncatula]
COG	NP_285649.1	3.00E-18	chalcone synthase [Deinococcus radiodurans R1]
Swissprot	tr\|Q9MAM3\|KCS1_ARATH	0	3-ketoacyl-CoA synthase 1
trEMBL	tr\|Q2HTC9\|Q2HTC9_MEDTR	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000369s00020543.1
ATGAGTAGCAGCAGCAATAGCATAGACATGGATAAGGAGAGATTAACGGCGGAGATGGACTTCAAGGACTCATCCTCCGCCGTGATAAAAATCCGGCGACGGTTGCCGGACTTCCTTCAGTCGGTGAAGCTGAAGTACGTGAAGTTGGGTTACGGCTACTCGTGCAACGCCGCAACCATTCTCCTTTTCGCCCTCATCGTCCCTGTCTTTTTGTCCCTGGCTGTTCAACTCACCGGTCTGAGTCTGAGACTGGACCGCCTGTCACACCTGTGGCCGAACCGGACGGTCCAACTCGACACCAACACGGTGGCGGTCTCTGGCGTGCTCCTCTTCCTGTTGGGCCTGTACTGGGCCAAGCGTTCCCCTCCGGTTTACCTTGTAGACTTCGCCTGCTACAAGCCAGAGAAGGTGCAAAAAATGCCAGTGGAGTCGTTGCAGAAGATGTTCGTGGAGAGTGGCGCGTACACGGAAGAGACCCTTCAGTTCCAGCACCGCATTCTTCAGAGGTCAGGTTTGGGTGACGAGACTTACGTGCCCAAAGCAATCATGACCAAGCCACCAAAACTCAGCATGGAAGAAGCGCGTTTGGAGGCAGAGGCTGTCCTGTTCGGAGCACTCGACGCTCTCTTCGCCAAGACCGGCGTTCAGCCCAGAGACATTGACATCCTCGTCGTGAATTGCAGCCTCTTCAACCCCACACCTTCTCTCTCCGCCATGATCGTGAACCACTACAAGCTCAGGACCAACATTAAAAGCTACAACCTTGGCGGCATGGGTTGCAGCGCGGGTCTCATTTCAATTGACCTCGCCAAGGACCTTCTCAAGGCCAACCCAAACTCCTACGCGGTGGTTGTGAGCACCGAGAATNTGACCCTTAATTGGTACTTTGGGAACGAACGCTCCATGCTCCTCAGTAACTGCATTTTCCGTGTGGGTGGGGCTGCCATACTCCTCTCCAGCAAATCCTCCGACCGGGCCCGGTCCAANTACCGGTTGGCCCACACGGTTCGAACCCACAAGGGAGCGGACGACAAGAACTACAACTGCGTGTACCAGAGAGAGGACGAGACAGGGAGGGTTGGGGTTTCTCTCGCGAGGGAGTTGATGGCGGTCGCCGGTGACGCCTTAAAGACCAACATAACGACGTTGGGGCCGCTGGTTCTGCCGTTTTCGGAGCAGTTCATGTTTTTTGTGTCGCTGGTACGGAGGAAGGTGCTGAAGGGGTCGGGGGTGAAGCCGTACATACCGGACTTCAAGATGGCGTTCGAGCACTTCTGCATCCACGCGGGGGGAAGGGCGGTGCTGGACGAGTTGCAGAAGAACCTGCAACTCAGTGAGTGGCACATGGAGCCGTCTCGGATGACGCTGCACCGATTCGGGAACACCTCCAGCAGCTCACTCTGGTACGAGCTGGCGTACACGGAGGCAAAGGGTCGGGTATCCAAGGGGGATCGGGTATGGCAGATCGCATTCGGGTCGGGTTTCAAGTGTAACAGCGCCGTGTGGAAGGCCGTTCGGGACATCCCCGTGGGAGACTGGCGGGGCAACCCCTGGGATGAAGACGTCAACAAGTACCCCGTTAATGTTAACGTCCCCACCGCTGCAGCTTCTTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00369	46976	48592	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000369s00020543.1	PF08392.7	FAE1_CUT1_RppA	117	405	1.50E-139
Glyur000369s00020543.1	PF08541.5	ACP_syn_III_C	423	503	3.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.725
SRR1783600	control	28.412
SRR1783602	moderate drought stress	23.098
SRR1811619	moderate drought stress	22.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.450
DRR006520	Root Summer glycyrrhizin high producing strain	2.506
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.078
DRR006524	Root Summer glycyrrhizin low producing strain	3.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.808
DRR006526	Leaf Summer glycyrrhizin high producing strain	25.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	86.177
SRR2868004	Drought Stress (root)	44.099
SRR2967015	Control (root)	41.269

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.169
SRR9715740	Leaf	13.178
SRR9715741	Leaf	10.313
SRR9715739	Root	52.649
SRR9715742	Root	22.928
SRR9715743	Root	30.780

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.454
SRR8749028	MeJA induced 9h	0.207
SRR8749029	MeJA induced 9h	0.113
SRR8749030	Uninduced	1.121
SRR8749031	Uninduced	1.298
SRR8749032	Uninduced	1.508

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	106.943
SRR8400027	Control - Root	110.902