Gene detail information of Glyur000369s00020533


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01100.32.00E-1960S acidic ribosomal protein family
NRXP_004494866.11.63E-38PREDICTED: 60S acidic ribosomal protein P1-3-like [Cicer arietinum]
Swissprottr|O23095|RLA12_ARATH3.00E-2860S acidic ribosomal protein P1-2
trEMBLtr|I3SWN8|I3SWN8_LOTJA7.00E-34Uncharacterized protein {ECO:0000313|EMBL:AFK44680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0036918193046-


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006414  translational elongation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000369s00020533.1PF00428.14Ribosomal_60s501361.00E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control56.217
SRR1783600control57.412
SRR1783602moderate drought stress50.207
SRR1811619moderate drought stress55.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain149.423
DRR006520Root Summer glycyrrhizin high producing strain142.573
DRR006521Root Winter glycyrrhizin high producing strain136.691
DRR006522Root Winter glycyrrhizin high producing strain130.740
DRR006523Root Summer glycyrrhizin low producing strain100.014
DRR006524Root Summer glycyrrhizin low producing strain98.045
DRR006525Leaf Summer glycyrrhizin high producing strain43.397
DRR006526Leaf Summer glycyrrhizin high producing strain43.633

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)221.445
SRR2868004Drought Stress (root)147.363
SRR2967015Control (root)95.577

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf101.177
SRR9715740Leaf125.623
SRR9715741Leaf102.531
SRR9715739Root203.845
SRR9715742Root125.180
SRR9715743Root135.085

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h194.961
SRR8749028MeJA induced 9h63.884
SRR8749029MeJA induced 9h133.620
SRR8749030Uninduced20.872
SRR8749031Uninduced15.248
SRR8749032Uninduced34.983

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root262.635
SRR8400027Control - Root226.250

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved