Gene detail

Gene detail information of Glyur000368s00021719.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67340.1	6.00E-131	HCP-like superfamily protein with MYND-type zinc finger
NR	XP_003538548.2	0	PREDICTED: F-box protein At1g67340-like [Glycine max]
Swissprot	tr\|Q9FYF9\|FB76_ARATH	3.00E-168	F-box protein At1g67340
trEMBL	tr\|G7JBZ1\|G7JBZ1_MEDTR	0	HCP family protein with MYND-type zinc finger protein {ECO:0000313\|EMBL:AES72034.2}

Sequence

Transcript Sequence

>Glyur000368s00021719.1
AACTTACGGACGACGACGGGANGTGGATCTGGGTCAACGCCGTTTGACCCATATAATAATAAACGACAACAAACAGGGCCGTTTCGTAAATTAACTGCTCCCACTTCCTATGTTTTTCCTTAATTTTTTTTTTCCCCTCTGCTGTTGTGTTGTGGTGTGTCTGTGTGGCGTGGGATTCTGATTCATTACCCCTCTCATATATAACTTGCTCCCTTTCCTTTTACCCCTTCTTCAAAAAACTCTCTCACATAGAATAGTAGATAGAGAGAGTGGATAGACATTATTATTATTATGAGAACGAGGAGAGGGTTGTGTTATCCTCGAGTAGTTCCAATTCCAGTACTCCCAACAAGGATGTGTTCAGAAACGCCCAAAGTCTCTATTCTTANCCGGAAAAGACAGAAGAGATCGCCGGAAAAACTCGCCGGAGATTCCAACCTCTTCGAATCCTTACCCGACGACCTTGTCCTCTCTATACTCACCAAGCTTAGCTCCACCGCAACTTCCCCCTCCGATTTTATCAGTGTTCTCATCACTTGCAAAAGACTAAACAACCTGGGTCTTCACTCTCTCGTACTGTCGAAAGCATCACACAGAACATTCTCAGTCAAAGCTAAAAACTGGTGTGATTCCTCTCACCGCTTCCTCAAACGCTGTGCCGATGCCGGAAACATTGAAGCGTGTTATACTCTCGGCATGATTCGGTTCTATTGTTTGAAAAACAGAGGGAGCGGCGCNTCGCTGATGGCGAAGGCGGCGATGAACTCTCACGCGCCGGCTCTGTACTCGCTCGCGGTGATACAGTTCAACGGAAGCGGCGGGACCAAAAACGACAAGGACCTTCGAGCCGGGGTGGCTCTGTGTGCACGCGCCGCGTTCCTCGGACACATCGACGCGCTTAGGGAGCTTGGACATTGCTTGCAGGACGGTTACGGCGTTAAGCAGAACGTAACGGAGGGGAGGCGTTTCCTCGTCCAAGCTAACGCCCGTGAACTTGCCGCCGTTTTATCCGCCAACGGCAATAACAAACACCCGTTGCTGACGTGGAGCCTCCAACAACAAACGGTTCAGGTCCCGAACCCGAACCCACGCCTCCGGGCATTAGCAGGGTCGGGTTGTCCATTGCTAAGCGATTTCGGATGCAACGTGCCGGCGCCGGAGGCTCACCCGGCGAGTAGGTTCATGGCGGAGTGGTTCACCGTTCGGGCCTGGTCTCCGGNTCCGGGTATGAGGCTCTGTTCGCATTCGGGNTGTGGACGACCCGAGACGAGGAAGCACGAGTTTCGGAGGTGTTCGGTTTGCGGTGCGGTGAATTATTGCTCACGCGCTTGTCAAGCGCTTGATTGGAAGTTCCGGCACAAGGCGGAGTGTGNCCCTGTCGAGAGGTGGCTCGATGAGGATGGGGAACATGCCGCCGGNGGTGAGGATGACGGCGCCGTCAACGGTGATGGGGTTGTTGTGATTGATAGTTAACGGCGACGGTAACGGAAGCCTGTTTGGAAAAGTTTTCAACGGGTACGAATCTAGTAGTATTTTTTTGACATGGGATACGGAAATATTGGGGGAAAAGAAAGAAAAATATTTATTGTCTCATTTATTATTACTGTGGCGTTGCAAAAAAAGTGCAAACTCCAATGGTAGAGTGTGGGCTACAGCCTATTCTCTGTTCCTTTTTACTTTTGTATAGAAGCTTAAATTAAATTCTCCCGAAAAGCAAAATGAAGGGGATGCTTTTTTGTTAATTATTTTNTCTCTCTTTATTTATATTCTGTTGAGTTCTCTAGGGCAACCAATCAATCGCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00368	169867	171883	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000368s00021719.1	PF08238.7	Sel1	129	146	54
Glyur000368s00021719.1	PF08238.7	Sel1	161	199	0.48
Glyur000368s00021719.1	PF08238.7	Sel1	201	230	0.52
Glyur000368s00021719.1	PF01753.13	zf-MYND	320	360	2.70E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.544
SRR1783600	control	12.535
SRR1783602	moderate drought stress	17.618
SRR1811619	moderate drought stress	17.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.623
DRR006520	Root Summer glycyrrhizin high producing strain	19.321
DRR006521	Root Winter glycyrrhizin high producing strain	4.252
DRR006522	Root Winter glycyrrhizin high producing strain	4.331
DRR006523	Root Summer glycyrrhizin low producing strain	13.745
DRR006524	Root Summer glycyrrhizin low producing strain	13.696
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	43.501

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.969
SRR2868004	Drought Stress (root)	31.601
SRR2967015	Control (root)	42.874

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.150
SRR9715740	Leaf	42.835
SRR9715741	Leaf	27.148
SRR9715739	Root	42.044
SRR9715742	Root	18.125
SRR9715743	Root	21.129

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.591
SRR8749028	MeJA induced 9h	2.819
SRR8749029	MeJA induced 9h	2.185
SRR8749030	Uninduced	1.339
SRR8749031	Uninduced	0.147
SRR8749032	Uninduced	0.062

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.252
SRR8400027	Control - Root	16.898