Gene detail information of Glyur000368s00021718 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67360.2 | 2.00E-58 | Rubber elongation factor protein (REF) |
| NR | XP_004502296.1 | 4.94E-134 | PREDICTED: REF/SRPP-like protein At1g67360-like [Cicer arietinum] |
| Swissprot | tr|Q9FYF7|Y1736_ARATH | 2.00E-79 | REF/SRPP-like protein At1g67360 |
| trEMBL | tr|I1MYF5|I1MYF5_SOYBN | 8.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01000.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00368 | 160322 | 163204 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000368s00021718.1 | PF05755.7 | REF | 11 | 213 | 2.40E-70 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 99.957 |
| SRR1783600 | control | 98.584 |
| SRR1783602 | moderate drought stress | 162.557 |
| SRR1811619 | moderate drought stress | 161.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 298.565 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 292.259 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1691.930 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1643.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 365.496 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 367.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 63.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.548 |
| SRR2868004 | Drought Stress (root) | 94.524 |
| SRR2967015 | Control (root) | 187.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 158.866 |
| SRR9715740 | Leaf | 242.683 |
| SRR9715741 | Leaf | 211.401 |
| SRR9715739 | Root | 115.990 |
| SRR9715742 | Root | 196.785 |
| SRR9715743 | Root | 188.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 130.802 |
| SRR8749028 | MeJA induced 9h | 409.918 |
| SRR8749029 | MeJA induced 9h | 213.156 |
| SRR8749030 | Uninduced | 271.526 |
| SRR8749031 | Uninduced | 181.109 |
| SRR8749032 | Uninduced | 324.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 105.038 |
| SRR8400027 | Control - Root | 94.953 |