Gene detail

Gene detail information of Glyur000368s00021716.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74110.1	4.00E-63	cytochrome P450, family 78, subfamily A, polypeptide 10
NR	XP_007163754.1	6.61E-155	hypothetical protein PHAVU_001G261500g [Phaseolus vulgaris]
Swissprot	tr\|Q9LMX7\|C78A5_ARATH	1.00E-70	Cytochrome P450 78A5
trEMBL	tr\|V7D240\|V7D240_PHAVU	2.00E-155	Uncharacterized protein {ECO:0000313\|EMBL:ESW35748.1}

Sequence

Transcript Sequence

>Glyur000368s00021716.1
CAAANATGCAAGTGCGATCAACTATNGTTGTCCAACTAACCGTAGATTCTTAACCTCTACCACTTTCCAAACTCTATATATACAATTGATCCTCCACTCGGTATAACCCATGACAGACACCCCCTTTCTGTCTAAGACACAATTCCTCAGTTACTCTTCTCCATTTGGAATTCTCCCAAATCTAAAGCTAGCACCTTCATTCCTAATTCCTAATCATCATGCTTCTAAGTATACTTGTTAACACCCTCTCTTCTTCTTGCTTCTGGTCACTCGTTACTCTTTTTCTNTCCACATCCCTCGCCCTTCTCGCTATCTCCCTCAACCACTGGCTCATCCCCGGAGGTTTCGCATGGCGTAACTACCACAACCGTTACAACAACAACAACAACAACAAAAAAGAACAAAAAGTACGCCTCCCTGTTGGGCCTACGGGATGGCCCATANTGGGATCTCTTCCCGAAATGGGCTCACTGGCCCACAGAAAACTCGCCGCGATGGCCACGTCACTAAACGCGAAAAAGCTNATGTCGTTTAGCCTTGGATCCAACCGCGTCGTCGTGAGTTCCCACCCTGACACCGCGAGAGAGATCCTGTGCGGTTCGTCTTTCTCGGACCGTCCNGTGAAAGAATCGGCACGCGTGTTGATGTTCGAGCGTGCCATTGGTTTCGCTCCATACGGTGCGTATTGGCGCCACCTTCGAAAAGTGGCCACTACTCACATGTTCTGTCCCAAGAGNATCTCTGCTTTGGAGAGTTTACGCCAACACGTGGCNTCTGAAATGGTGGTGAAAACACAGAAGGAGATGGTGGAGAAAGGGGTTGTGGAGGTTCGGGNGGTGTTGCATGAAGGGTCTCTGGGCAATGTTTTGGAGAGTGTGTTTGGTGGTTCTTTGGGAACAGAGATGAAGGAGGTGTTGGGGGATATGGTTAAGGAAGGGTATGAGTTGATTTCTATGTTTAATTGGGAGGACTATTTTGCTTTTAAGTTTTTGGACTTTAATGGGGTCAAGAGAAGGTGTCACAAATTGGCGGGTAAGGTCAATGTTGTGGTGGGTCAAATTGTGGAAGAGAGGAAAACATCTGGAGAGTTTGTTGGAAAGGATGATTTTCTTAGTGCTCTGTTATCGTTGCCTGANGAGGAAAGGTTGGGTGATTCGGATATAGTGGCCATTTTGTGGGGGCGGAGTAACTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00368	128992	130988	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP78A5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000368s00021716.1	PF00067.17	p450	67	317	5.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.047
SRR1783600	control	39.964
SRR1783602	moderate drought stress	30.340
SRR1811619	moderate drought stress	30.480

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	126.177
DRR006520	Root Summer glycyrrhizin high producing strain	124.708
DRR006521	Root Winter glycyrrhizin high producing strain	0.418
DRR006522	Root Winter glycyrrhizin high producing strain	0.364
DRR006523	Root Summer glycyrrhizin low producing strain	27.617
DRR006524	Root Summer glycyrrhizin low producing strain	26.356
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.246
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.346

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	90.029
SRR2868004	Drought Stress (root)	52.955
SRR2967015	Control (root)	92.688

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.743
SRR9715740	Leaf	0.715
SRR9715741	Leaf	1.869
SRR9715739	Root	61.061
SRR9715742	Root	62.884
SRR9715743	Root	59.675

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.101
SRR8749030	Uninduced	0.053
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.086
SRR8400027	Control - Root	26.364