Gene detail

Gene detail information of Glyur000368s00021711

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G27920.1	microtubule-associated protein 65-8
NR	XP_004502299.1	PREDICTED: 65-kDa microtubule-associated protein 8-like [Cicer arietinum]
Swissprot	tr\|Q9C7G0\|MA658_ARATH	65-kDa microtubule-associated protein 8
trEMBL	tr\|G7JC01\|G7JC01_MEDTR	Microtubule associated protein, MAP65/ASE1 family protein {ECO:0000313\|EMBL:AES72044.2}

Sequence

Transcript Sequence

>Glyur000368s00021711.1
CTGACTGATTCTTGAACCCAAAGCTTACATTACCCACCTCTGTCACCCTTGTCTTTTAAGCAAAACCTAATACCAAATGGTAAATACTATCCCCACTGACACCAATAACAATTCTTTCTCATCATTCTTGTGTATTGCCTCTTCACCATTCAGTTCAGTTTTTTTTTATCCAGGAAGTTCACTCCTCAGCATTATCTTAAGTTCAATCTGTACTGAAGGGTACCCATCAAATTAAATGGGTTCATTCCAGACACCAATTGGAATGAGAAGCTCCACATTGCTAGAAACTTCATGTGGATTCCTGTTACAGGAACTGCAGATAATATGGGATGAAATTGGAGAAGATAAGTTCGAGAGGGAGAAGGTTCTGCTGGATTTGGAGCAGGAGTGCCTTGAGGTTTACAGAAAAAAGGTTGACAGAGCAAATACATCTAGAGCTTGTCTGCATCAGGAATTGGCTGAGGCTGAGGCTGAATTTACTCACCTTCTTTTGTCCCTTGGTGAACGATCTCTTCCCGGACGGCCAGAAAAAAGGCCGGGCACACTAAAAGAGCAGCTAGATTCAATCACTCCAGCACTCCGGGAGATGCGCTTGAGGAAAGAAGAGAGGTTAAACCAATTCCGAGCTGTGCAAGGGCAAATCCAAAAAATTTCTGCAGAAATTGCAGGTAACTCGGACAATGCANCCTCGATCATTGCAGTGAACGAGAATGATCTTTCACTAAAAAGGCTTGAGGAGTATCAGAATGAGTTGCAAAGGCTCTACGATGAGAAGAATGAAAGACTCCAGCAAGTGGAGAAATACATAGACAAAATACACAGCTTGTCCACAATCTTGGGAAAGGATTCCTCAGCAATCATCATGGAAGTTCACCCCAGCTTGAATGATTTGTGTGGAATAACAAAAAATATAAGTGACGCTATCCTACAGAAACTCAATATCACAGTGGAGTCCCTTTATGAAGAAAAGCAAAATCGGCTTGACAAGCTTCACCATTTAGGCAAAGCACTGTCAAATCTATGGAATCTAATGGATACACCGTACAGTGATCGACAATCTTTTTCCCATGTAATCAATTTATTGTCAGTTTCATCAGCGGAAGTATCAGATCCAGGAAGTCTTACTCTAGAAATAGTCCAACAGACTGAAGCTGAAGTAAAAAGACTGGATCAACTAAAAGCAAGCAAGATGAAGGAGCTATTCCAGAAGAAGCAGGAGGAACTGGAGTTGATATGCAAGAAATCACACGTGGAGATTCCGTCACGGNCAGAAATGAACAATATAATTAGCCTCATAAACTCAGGGGAGATTGACCATTCCGATCTCCTCNTGAGCATGGATGAACAGATATCAAGAGCAAAAGAAGAGGCTTCTAGCAGGAAGGCCATAATGGAGAAAGTTGAGAAGTGGATGTTAGCACGTGATGAGGAGCGCTGGCTAGAAGAATACAGCAGGGATGATAATCGATACTCAGTCAGTCGAGGAGCTCACAAAAACTTGAGACGAGCTGAACATGTGCTTACATTCAATGGTTGCTATTTTCCAGCTTTGGTAGATTTGCTTATAAAAATGACCAAGAGTTGGGAAGAAGAAAGAAATAAAGTTTTCTTGTATGATCAGGTACCTCTAATGGAAATATTGGAAGAATACAACATGCTAAGGCAGGAAAAGGAGGAGGATAAGAAAAGACAGCAGAAGAAGGTCCAGAGCCAAGTAGTTGCGGAGCGCGATAACATGAATATGTCAAGACCAGGCACCACCAGTAGACGTCTTCCAAATAGAAGCTTGAATGGAAGTCTAGACATTGCACCCCTGAACAAAAGGTTCCCAATGGGTATCCAACAATTGGGATCAAACAGCATAAATTCAGGAAACCAAGGCATATCCTTCATTAAGGATGTAAGGAAGACACAAAGGAAAAAGATTTTCGGCGAACCTGCCTTTGTTTTTCATACAAGAGATGAGGCATCTTCTGCGGCGTCAACACATTCTGGACCATTTTCTCCTTAAATTTCTTTATCCTCGAAGCATAGATTTTGACTGAAAATGCTTCAGAAAGCTTGCTTTCCTAACTGTAGTGGATCTGCAAAAGAATAAATTCAAACTCTACCTATGTTTTTGCTCTTAAAGTTGCCCAAATGGATTAGCTCATGGTTGATGTCAACCACAAACAGATTAAGTACTCAGTTCAATGTTTCATTTGTAATTTTGCACCATACAGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00368	102710	107294	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000226 microtubule cytoskeleton organization

GO:0000910 cytokinesis

molecular_function
GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000368s00021711.1	PF03999.7	MAP65_ASE1	42	517	3.30E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.818
SRR1783600	control	2.789
SRR1783602	moderate drought stress	2.717
SRR1811619	moderate drought stress	2.908

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.380
DRR006520	Root Summer glycyrrhizin high producing strain	5.243
DRR006521	Root Winter glycyrrhizin high producing strain	0.395
DRR006522	Root Winter glycyrrhizin high producing strain	0.383
DRR006523	Root Summer glycyrrhizin low producing strain	2.583
DRR006524	Root Summer glycyrrhizin low producing strain	2.432
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.562
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.837

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.579
SRR2868004	Drought Stress (root)	12.757
SRR2967015	Control (root)	10.499

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.593
SRR9715740	Leaf	4.071
SRR9715741	Leaf	1.671
SRR9715739	Root	0.290
SRR9715742	Root	3.172
SRR9715743	Root	2.350

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.307
SRR8749028	MeJA induced 9h	0.077
SRR8749029	MeJA induced 9h	0.134
SRR8749030	Uninduced	0.105
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.585
SRR8400027	Control - Root	18.232